CF417639

Overview
NameCF417639
Unique NameCF417639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length587
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4A_SCHPO (40S ribosomal protein S4-A OS=Schizosaccharomyces pombe GN=rps4a PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 8.305e-67
Identity = 81/114 (71.05%), Postives = 94/114 (82.46%), Query Frame = 1 
Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            M RG KKHLKR+ AP HW+LDKL G +APKPS GPHK+RECLPLI+ LRNRLKYAL  REV AILMQR + VDGKVRTD T+P GFMDV+S+ KT E+FRL+YD KGRF +H +
Sbjct:    1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRI 114

HSP 2 Score: 100.523 bits (249), Expect = 8.305e-67
Identity = 48/72 (66.67%), Postives = 55/72 (76.39%), Query Frame = 2 
Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            EEAK+ LCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK  DTIKL+L  NKI  FI  D    VMVTGGRN
Sbjct:  117 EEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRN 188
[Close]
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_YARLI (40S ribosomal protein S4 OS=Yarrowia lipolytica GN=RPS4 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.306e-67
Identity = 82/114 (71.93%), Postives = 93/114 (81.58%), Query Frame = 1 
Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            MARG KKHLKRL AP HWMLDKL G +AP+ S+GPHK RE LPL++ LRNRLKYAL  REV AILMQR V VDGKVRTD T+PAGFMDV+ + KT ENFRL+YD KGRF +H +
Sbjct:    1 MARGPKKHLKRLAAPSHWMLDKLSGTYAPRSSAGPHKLRESLPLVIFLRNRLKYALNGREVNAILMQRLVKVDGKVRTDSTFPAGFMDVIQLEKTGENFRLVYDVKGRFAVHRI 114

HSP 2 Score: 102.449 bits (254), Expect = 8.306e-67
Identity = 48/73 (65.75%), Postives = 57/73 (78.08%), Query Frame = 2 
Query:  365 DEEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            DEEA + L KV+ VQ G+KGIPY+ T+DGRTIRYPDPLIK  DT+K+DL   KIT F+  + GNIVM TGGRN
Sbjct:  116 DEEAAYKLGKVKRVQVGKKGIPYLVTHDGRTIRYPDPLIKVNDTVKIDLATGKITSFVKFENGNIVMTTGGRN 188
[Close]
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4Y1_MACFU (40S ribosomal protein S4, Y isoform 1 OS=Macaca fuscata fuscata GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 1.412e-66
Identity = 84/114 (73.68%), Postives = 95/114 (83.33%), Query Frame = 1 
Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRI 114

HSP 2 Score: 96.6709 bits (239), Expect = 1.412e-66
Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 2 
Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            EEAK+ LCKVR +  G KGIP++ T+D RTIRYPDP+IK  DT+++DL   KIT FI  D GN+ MV GG N
Sbjct:  117 EEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPVIKVNDTVRIDLGSGKITSFIKFDTGNVCMVIGGAN 188
[Close]
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4Y2_PANTR (40S ribosomal protein S4, Y isoform 2 OS=Pan troglodytes GN=RPS4Y2 PE=2 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 1.842e-66
Identity = 84/114 (73.68%), Postives = 95/114 (83.33%), Query Frame = 1 
Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRI 114

HSP 2 Score: 97.0561 bits (240), Expect = 1.842e-66
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 2 
Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            EEAK+ LCKVR +  G KGIP++ T+D RTIRYPDPLIK  DT+++DL   KIT FI  D GN+ MV GG N
Sbjct:  117 EEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIGGAN 188
[Close]
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_LYSTE (40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.402e-66
Identity = 82/114 (71.93%), Postives = 92/114 (80.70%), Query Frame = 1 
Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            MARG KKHLKRLNAPK WML KLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT  EV  I MQR + VDGKVRTD  YP GFMDVV+I KT E FRL+YD KGRF +H +
Sbjct:    1 MARGPKKHLKRLNAPKSWMLGKLGGVYAPRPSTGPHKLRECLPLLIFLRNRLKYALTNCEVTKITMQRLIKVDGKVRTDSNYPLGFMDVVTIEKTGEFFRLIYDVKGRFSIHRI 114

HSP 2 Score: 100.908 bits (250), Expect = 2.402e-66
Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 2 
Query:  365 DEEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            +EEAK+ LCKVR VQ G KG+P++ T+DGRT+RYPDP+IK  DTI+L++  NKI D I  D GN+ M+TGGRN
Sbjct:  116 NEEAKYKLCKVRRVQTGPKGVPFLVTHDGRTLRYPDPVIKVNDTIQLEIATNKILDSIKFDSGNLCMITGGRN 188
[Close]
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_CARGR (40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 5.325e-66
Identity = 81/114 (71.05%), Postives = 94/114 (82.46%), Query Frame = 1 
Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RE LPL++ LRNRLKYALT  EV  I+MQR + VDGKVRTD  YP+GFMDV++I KT E FRL+YD KGRF +H +
Sbjct:    1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRESLPLVIFLRNRLKYALTNSEVTKIVMQRLIKVDGKVRTDPNYPSGFMDVITIEKTGEFFRLIYDVKGRFTIHRI 114

HSP 2 Score: 99.3673 bits (246), Expect = 5.325e-66
Identity = 45/72 (62.50%), Postives = 57/72 (79.17%), Query Frame = 2 
Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            EEAK+ LCKV+ VQ G KGIP++ T+DGRTIRYPDP+IK  DTI+L++  +KI D I  D GN+ M+TGGRN
Sbjct:  117 EEAKYKLCKVKRVQTGPKGIPFLVTHDGRTIRYPDPIIKVNDTIQLEIANSKIMDSIKFDSGNLCMITGGRN 188
[Close]
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 1.539e-65
Identity = 89/114 (78.07%), Postives = 95/114 (83.33%), Query Frame = 1 
Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            MARG KKHLKRL AP HWMLDKL G +AP+PSSGPHK RECLPLILVLRNRLKYALT +EV  ILMQR V VDGKVRTD  YPAGFMDV+SI KT ENFRLL+D KGRF L  +
Sbjct:    1 MARGPKKHLKRLAAPNHWMLDKLSGKWAPRPSSGPHKLRECLPLILVLRNRLKYALTKKEVTLILMQRLVKVDGKVRTDPNYPAGFMDVISIEKTKENFRLLFDPKGRFTLQRI 114

HSP 2 Score: 89.3521 bits (220), Expect = 1.539e-65
Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 2 
Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            EEAKF L +V  V+ G +GIPY++T DGRTIRYPDP I   DTIK+D+   KIT FI  +V N+ M+ GG N
Sbjct:  117 EEAKFKLARVTRVETGNQGIPYVHTDDGRTIRYPDPAISIHDTIKIDIESGKITAFIPFEVNNLCMIVGGHN 188
[Close]
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANTR (40S ribosomal protein S4, Y isoform 1 OS=Pan troglodytes GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 2.008e-65
Identity = 84/114 (73.68%), Postives = 95/114 (83.33%), Query Frame = 1 
Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRI 114

HSP 2 Score: 93.2041 bits (230), Expect = 2.008e-65
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 2 
Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            EEAK+ LCKVR +  G KGIP++ T+D RTIRYPDP+IK  DT+++DL   KI +FI  D GN+ MV GG N
Sbjct:  117 EEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGAN 188
[Close]
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANPA (40S ribosomal protein S4, Y isoform 1 OS=Pan paniscus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 2.008e-65
Identity = 84/114 (73.68%), Postives = 95/114 (83.33%), Query Frame = 1 
Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRI 114

HSP 2 Score: 93.2041 bits (230), Expect = 2.008e-65
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 2 
Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            EEAK+ LCKVR +  G KGIP++ T+D RTIRYPDP+IK  DT+++DL   KI +FI  D GN+ MV GG N
Sbjct:  117 EEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGAN 188
[Close]
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4Y1_HUMAN (40S ribosomal protein S4, Y isoform 1 OS=Homo sapiens GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 2.008e-65
Identity = 84/114 (73.68%), Postives = 95/114 (83.33%), Query Frame = 1 
Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRI 114

HSP 2 Score: 93.2041 bits (230), Expect = 2.008e-65
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 2 
Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            EEAK+ LCKVR +  G KGIP++ T+D RTIRYPDP+IK  DT+++DL   KI +FI  D GN+ MV GG N
Sbjct:  117 EEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGAN 188
The following BLAST results are available for this feature:
BLAST of CF417639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RS4A_SCHPO8.305e-6771.0540S ribosomal protein S4-A OS=Schizosaccharomyces ... [more]
RS4_YARLI8.306e-6771.9340S ribosomal protein S4 OS=Yarrowia lipolytica GN... [more]
RS4Y1_MACFU1.412e-6673.6840S ribosomal protein S4, Y isoform 1 OS=Macaca fu... [more]
RS4Y2_PANTR1.842e-6673.6840S ribosomal protein S4, Y isoform 2 OS=Pan trogl... [more]
RS4_LYSTE2.402e-6671.9340S ribosomal protein S4 OS=Lysiphlebus testaceipe... [more]
RS4_CARGR5.325e-6671.0540S ribosomal protein S4 OS=Carabus granulatus GN=... [more]
RS4_DICDI1.539e-6578.0740S ribosomal protein S4 OS=Dictyostelium discoide... [more]
RS4Y1_PANTR2.008e-6573.6840S ribosomal protein S4, Y isoform 1 OS=Pan trogl... [more]
RS4Y1_PANPA2.008e-6573.6840S ribosomal protein S4, Y isoform 1 OS=Pan panis... [more]
RS4Y1_HUMAN2.008e-6573.6840S ribosomal protein S4, Y isoform 1 OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-569 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417639 ID=CF417639; Name=CF417639; organism=Citrus sinensis; type=EST; length=587bp
AGCTTCAAACTCACAAAAATGGCTAGAGGATTGAAGAAGCACTTGAAGAG
GCTCAATGCCCCTAAGCACTGGATGCTTGACAAGCTTGGTGGTGCATTTG
CACCTAAGCCATCATCTGGTCCCCACAAGTCAAGGGAATGCTTGCCATTG
ATCCTTGTATTGCGAAACCGTTTGAAATATGCTCTCACATATCGTGAAGT
TATTGCTATTCTGATGCAACGACATGTTCTTGTTGATGGGAAGGTTAGGA
CAGATAAGACCTACCCTGCTGGTTTCATGGATGTTGTGTCAATTCCCAAG
ACCAACGAGAACTTCCGTCTCCTTTATGACACCAAGGGTCGCTTCCGTCT
CCATTCCCTCAGAGGATGAGGAGGCAAAATTCNAGCTTTGCAAAGTTAGA
TCAGTCCAGTTTGGCCAGAAAGGTATCCCATACATCAACACCTATGATGG
GCGTACCATCCGCTACCCTGACCCACTCATCAAAGCCNATGATACCATCA
AACTTGACTTANAAGAGAACAAGATCACTGACTTCATCNAGNTTGATGTT
GGGAATATTGTCATGGTCACTGGGGGTAGAAACAGAG
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