CF417639
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4A_SCHPO (40S ribosomal protein S4-A OS=Schizosaccharomyces pombe GN=rps4a PE=2 SV=2) HSP 1 Score: 173.326 bits (438), Expect = 8.305e-67 Identity = 81/114 (71.05%), Postives = 94/114 (82.46%), Query Frame = 1 Query: 19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360 M RG KKHLKR+ AP HW+LDKL G +APKPS GPHK+RECLPLI+ LRNRLKYAL REV AILMQR + VDGKVRTD T+P GFMDV+S+ KT E+FRL+YD KGRF +H + Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRI 114 HSP 2 Score: 100.523 bits (249), Expect = 8.305e-67 Identity = 48/72 (66.67%), Postives = 55/72 (76.39%), Query Frame = 2 Query: 368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583 EEAK+ LCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK DTIKL+L NKI FI D VMVTGGRN Sbjct: 117 EEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRN 188
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_YARLI (40S ribosomal protein S4 OS=Yarrowia lipolytica GN=RPS4 PE=2 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 8.306e-67 Identity = 82/114 (71.93%), Postives = 93/114 (81.58%), Query Frame = 1 Query: 19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360 MARG KKHLKRL AP HWMLDKL G +AP+ S+GPHK RE LPL++ LRNRLKYAL REV AILMQR V VDGKVRTD T+PAGFMDV+ + KT ENFRL+YD KGRF +H + Sbjct: 1 MARGPKKHLKRLAAPSHWMLDKLSGTYAPRSSAGPHKLRESLPLVIFLRNRLKYALNGREVNAILMQRLVKVDGKVRTDSTFPAGFMDVIQLEKTGENFRLVYDVKGRFAVHRI 114 HSP 2 Score: 102.449 bits (254), Expect = 8.306e-67 Identity = 48/73 (65.75%), Postives = 57/73 (78.08%), Query Frame = 2 Query: 365 DEEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583 DEEA + L KV+ VQ G+KGIPY+ T+DGRTIRYPDPLIK DT+K+DL KIT F+ + GNIVM TGGRN Sbjct: 116 DEEAAYKLGKVKRVQVGKKGIPYLVTHDGRTIRYPDPLIKVNDTVKIDLATGKITSFVKFENGNIVMTTGGRN 188
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4Y1_MACFU (40S ribosomal protein S4, Y isoform 1 OS=Macaca fuscata fuscata GN=RPS4Y1 PE=2 SV=3) HSP 1 Score: 176.407 bits (446), Expect = 1.412e-66 Identity = 84/114 (73.68%), Postives = 95/114 (83.33%), Query Frame = 1 Query: 19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360 MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H + Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRI 114 HSP 2 Score: 96.6709 bits (239), Expect = 1.412e-66 Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 2 Query: 368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583 EEAK+ LCKVR + G KGIP++ T+D RTIRYPDP+IK DT+++DL KIT FI D GN+ MV GG N Sbjct: 117 EEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPVIKVNDTVRIDLGSGKITSFIKFDTGNVCMVIGGAN 188
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4Y2_PANTR (40S ribosomal protein S4, Y isoform 2 OS=Pan troglodytes GN=RPS4Y2 PE=2 SV=3) HSP 1 Score: 175.637 bits (444), Expect = 1.842e-66 Identity = 84/114 (73.68%), Postives = 95/114 (83.33%), Query Frame = 1 Query: 19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360 MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H + Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRI 114 HSP 2 Score: 97.0561 bits (240), Expect = 1.842e-66 Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 2 Query: 368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583 EEAK+ LCKVR + G KGIP++ T+D RTIRYPDPLIK DT+++DL KIT FI D GN+ MV GG N Sbjct: 117 EEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIGGAN 188
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_LYSTE (40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 2.402e-66 Identity = 82/114 (71.93%), Postives = 92/114 (80.70%), Query Frame = 1 Query: 19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360 MARG KKHLKRLNAPK WML KLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV I MQR + VDGKVRTD YP GFMDVV+I KT E FRL+YD KGRF +H + Sbjct: 1 MARGPKKHLKRLNAPKSWMLGKLGGVYAPRPSTGPHKLRECLPLLIFLRNRLKYALTNCEVTKITMQRLIKVDGKVRTDSNYPLGFMDVVTIEKTGEFFRLIYDVKGRFSIHRI 114 HSP 2 Score: 100.908 bits (250), Expect = 2.402e-66 Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 2 Query: 365 DEEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583 +EEAK+ LCKVR VQ G KG+P++ T+DGRT+RYPDP+IK DTI+L++ NKI D I D GN+ M+TGGRN Sbjct: 116 NEEAKYKLCKVRRVQTGPKGVPFLVTHDGRTLRYPDPVIKVNDTIQLEIATNKILDSIKFDSGNLCMITGGRN 188
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_CARGR (40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 5.325e-66 Identity = 81/114 (71.05%), Postives = 94/114 (82.46%), Query Frame = 1 Query: 19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360 MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RE LPL++ LRNRLKYALT EV I+MQR + VDGKVRTD YP+GFMDV++I KT E FRL+YD KGRF +H + Sbjct: 1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRESLPLVIFLRNRLKYALTNSEVTKIVMQRLIKVDGKVRTDPNYPSGFMDVITIEKTGEFFRLIYDVKGRFTIHRI 114 HSP 2 Score: 99.3673 bits (246), Expect = 5.325e-66 Identity = 45/72 (62.50%), Postives = 57/72 (79.17%), Query Frame = 2 Query: 368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583 EEAK+ LCKV+ VQ G KGIP++ T+DGRTIRYPDP+IK DTI+L++ +KI D I D GN+ M+TGGRN Sbjct: 117 EEAKYKLCKVKRVQTGPKGIPFLVTHDGRTIRYPDPIIKVNDTIQLEIANSKIMDSIKFDSGNLCMITGGRN 188
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3) HSP 1 Score: 180.259 bits (456), Expect = 1.539e-65 Identity = 89/114 (78.07%), Postives = 95/114 (83.33%), Query Frame = 1 Query: 19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360 MARG KKHLKRL AP HWMLDKL G +AP+PSSGPHK RECLPLILVLRNRLKYALT +EV ILMQR V VDGKVRTD YPAGFMDV+SI KT ENFRLL+D KGRF L + Sbjct: 1 MARGPKKHLKRLAAPNHWMLDKLSGKWAPRPSSGPHKLRECLPLILVLRNRLKYALTKKEVTLILMQRLVKVDGKVRTDPNYPAGFMDVISIEKTKENFRLLFDPKGRFTLQRI 114 HSP 2 Score: 89.3521 bits (220), Expect = 1.539e-65 Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 2 Query: 368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583 EEAKF L +V V+ G +GIPY++T DGRTIRYPDP I DTIK+D+ KIT FI +V N+ M+ GG N Sbjct: 117 EEAKFKLARVTRVETGNQGIPYVHTDDGRTIRYPDPAISIHDTIKIDIESGKITAFIPFEVNNLCMIVGGHN 188
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANTR (40S ribosomal protein S4, Y isoform 1 OS=Pan troglodytes GN=RPS4Y1 PE=2 SV=2) HSP 1 Score: 176.022 bits (445), Expect = 2.008e-65 Identity = 84/114 (73.68%), Postives = 95/114 (83.33%), Query Frame = 1 Query: 19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360 MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H + Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRI 114 HSP 2 Score: 93.2041 bits (230), Expect = 2.008e-65 Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 2 Query: 368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583 EEAK+ LCKVR + G KGIP++ T+D RTIRYPDP+IK DT+++DL KI +FI D GN+ MV GG N Sbjct: 117 EEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGAN 188
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANPA (40S ribosomal protein S4, Y isoform 1 OS=Pan paniscus GN=RPS4Y1 PE=3 SV=2) HSP 1 Score: 176.022 bits (445), Expect = 2.008e-65 Identity = 84/114 (73.68%), Postives = 95/114 (83.33%), Query Frame = 1 Query: 19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360 MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H + Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRI 114 HSP 2 Score: 93.2041 bits (230), Expect = 2.008e-65 Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 2 Query: 368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583 EEAK+ LCKVR + G KGIP++ T+D RTIRYPDP+IK DT+++DL KI +FI D GN+ MV GG N Sbjct: 117 EEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGAN 188
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4Y1_HUMAN (40S ribosomal protein S4, Y isoform 1 OS=Homo sapiens GN=RPS4Y1 PE=2 SV=2) HSP 1 Score: 176.022 bits (445), Expect = 2.008e-65 Identity = 84/114 (73.68%), Postives = 95/114 (83.33%), Query Frame = 1 Query: 19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360 MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H + Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRI 114 HSP 2 Score: 93.2041 bits (230), Expect = 2.008e-65 Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 2 Query: 368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583 EEAK+ LCKVR + G KGIP++ T+D RTIRYPDP+IK DT+++DL KI +FI D GN+ MV GG N Sbjct: 117 EEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGAN 188 The following BLAST results are available for this feature:
BLAST of CF417639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 97
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417639 ID=CF417639; Name=CF417639; organism=Citrus sinensis; type=EST; length=587bpback to top |