CF417639
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4Y1_GORGO (40S ribosomal protein S4, Y isoform 1 OS=Gorilla gorilla gorilla GN=RPS4Y1 PE=3 SV=2) HSP 1 Score: 176.022 bits (445), Expect = 2.008e-65 Identity = 84/114 (73.68%), Postives = 95/114 (83.33%), Query Frame = 1 Query: 19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360 MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H + Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRI 114 HSP 2 Score: 93.2041 bits (230), Expect = 2.008e-65 Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 2 Query: 368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583 EEAK+ LCKVR + G KGIP++ T+D RTIRYPDP+IK DT+++DL KI +FI D GN+ MV GG N Sbjct: 117 EEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGAN 188
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2) HSP 1 Score: 167.548 bits (423), Expect = 3.414e-65 Identity = 81/114 (71.05%), Postives = 93/114 (81.58%), Query Frame = 1 Query: 19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360 MARG KKHLKRL APK WMLDKLGG FAP+PS+GPHK RE LPL++ LRNRLKYAL EV I+MQR V VDGKVRTD TYPAG+MDV+++ KT E FRL+YD KGRF +H + Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRI 114 HSP 2 Score: 100.908 bits (250), Expect = 3.414e-65 Identity = 43/72 (59.72%), Postives = 57/72 (79.17%), Query Frame = 2 Query: 368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583 EEAK+ LCKV+ Q G KG+P++ T+DGRTIRYPDPLI A D++++D+ KITD+I D GN+ M+TGGRN Sbjct: 117 EEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRN 188
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4Y1_PONPY (40S ribosomal protein S4, Y isoform 1 OS=Pongo pygmaeus GN=RPS4Y1 PE=3 SV=2) HSP 1 Score: 172.555 bits (436), Expect = 4.452e-65 Identity = 83/114 (72.81%), Postives = 94/114 (82.46%), Query Frame = 1 Query: 19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360 MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF + + Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDITYPAGFMDVISIDKTGEHFRLVYDTKGRFAVQRI 114 HSP 2 Score: 95.5153 bits (236), Expect = 4.452e-65 Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 2 Query: 368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583 EEAK+ LCKVR + G KGIP++ T+D RTIRYPDPLIK DT+++DL KI +FI D GN+ MV GG N Sbjct: 117 EEAKYKLCKVRKITVGMKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKIINFIKFDTGNVCMVIGGAN 188
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3) HSP 1 Score: 166.392 bits (420), Expect = 5.288e-63 Identity = 80/114 (70.18%), Postives = 93/114 (81.58%), Query Frame = 1 Query: 19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360 MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQ + +DGKVR D TYPAGF+DV+SI KT E+FRL+Y+TKG F +H + Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRI 114 HSP 2 Score: 94.7449 bits (234), Expect = 5.288e-63 Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 2 Query: 368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583 EEAK+ LCKVR + G KGIP++ T+D RTIRYPDPLIK DT+++DL KIT FI D GN+ MV G N Sbjct: 117 EEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIAGAN 188
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.529e-62 Identity = 76/114 (66.67%), Postives = 89/114 (78.07%), Query Frame = 1 Query: 19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360 M RG KKHLKRL AP HWML KL G +AP+PS+GPH RE LPL + LRNRL YAL REV AI+MQ+HV V GKVRTD TYPAGFMDV+++ TNE+FRL YD KG+F +H + Sbjct: 1 MGRGPKKHLKRLAAPSHWMLXKLSGTYAPRPSAGPHXLRESLPLXVFLRNRLXYALCGREVKAIMMQQHVQVVGKVRTDTTYPAGFMDVITLEATNEHFRLAYDVKGKFAVHRI 114 HSP 2 Score: 100.138 bits (248), Expect = 1.529e-62 Identity = 46/72 (63.89%), Postives = 56/72 (77.78%), Query Frame = 2 Query: 368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583 EEA + L KV+ VQ G+KG+PY+ T+DGRTIRYPDPLI+A DT+K+DL KI FI D G +VMVTGGRN Sbjct: 117 EEAVYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPLIRANDTVKIDLATGKIXSFIKFDTGRLVMVTGGRN 188
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 7.470e-59 Identity = 70/95 (73.68%), Postives = 79/95 (83.16%), Query Frame = 1 Query: 76 LDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360 LDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H + Sbjct: 1 LDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRI 95 HSP 2 Score: 100.908 bits (250), Expect = 7.470e-59 Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 2 Query: 368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583 EEAK+ LCKVR + G KGIP++ T+D RTIRYPDPLIK DTI++DL KITDFI D GN+ MVTGG N Sbjct: 98 EEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGAN 169
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 8.816e-57 Identity = 77/113 (68.14%), Postives = 87/113 (76.99%), Query Frame = 1 Query: 25 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLR 363 RG KKHLKRL AP HWMLDKLGG FA +P+ GPHK RE LPL L LRNRLKYAL Y E IL QR V VDGKVRT +P GFMDVV+I +TNE FR+LYDTKGR+ +H ++ Sbjct: 2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQ 114 HSP 2 Score: 83.9593 bits (206), Expect = 8.816e-57 Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 2 Query: 371 EAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583 EA F LCKV+SV+ KG+P + T DGRTIRYPDP +K DTI ++ KITD + + GN+ VTGGRN Sbjct: 117 EADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRN 187
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 8.187e-35 Identity = 56/114 (49.12%), Postives = 78/114 (68.42%), Query Frame = 1 Query: 19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360 M G + HLKR APK WMLDK GG FA P+SGPHK EC+PL ++ L+YA ++E+ IL ++++ V+G+VRT+ +P G DVVSI KT E+FR+LY+ +F LH + Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRI 114 HSP 2 Score: 45.0542 bits (105), Expect = 8.187e-35 Identity = 25/73 (34.25%), Postives = 41/73 (56.16%), Query Frame = 2 Query: 368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRNR 586 EEA + L KV ++ +GIPYI + G +IR+ DP I TIK+ +K+ ++I ++ V+ G+ R Sbjct: 117 EEASYRLTKVTK-KYENQGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKAR 188
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 2.938e-34 Identity = 77/138 (55.80%), Postives = 94/138 (68.12%), Query Frame = 1 Query: 22 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQR--HVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRG*GGKIXALQS*ISPVWPERYP 429 ARG KKHLKR+NAPK WML+KLGG +A +PS GPHK RE LPL ++L+ RL YAL R+V IL + +V VD KVR DK YP G MDVV I KT+++FR+LYDTKGRF L SL K L+ + P + P Sbjct: 1 ARGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEGNVFVDQKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIP 138 HSP 2 Score: 72.0182 bits (175), Expect = 2.421e-12 Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 2 Query: 368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583 EEAK+ L KV + G IPYI T+D RTIR+P+P IK DT+K DL NKI +F + GN+ + G N Sbjct: 118 EEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNN 189
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4E_METJA (30S ribosomal protein S4e OS=Methanocaldococcus jannaschii GN=rps4e PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 4.458e-29 Identity = 53/109 (48.62%), Postives = 70/109 (64.22%), Query Frame = 1 Query: 25 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRL 351 +G K+HLKRL AP W L + F +P G H E LPL+L++R+ LKYA RE I+ VLVDG+VR ++ P G MDVVS+P NEN+R+L+D KGR +L Sbjct: 4 KGPKRHLKRLAAPVRWELPRKIHKFTVRPLPGAHPMSESLPLLLIVRDILKYADNAREAKKIIKMGKVLVDGRVRKEEKLPVGLMDVVSLPDANENYRVLFDRKGRIKL 112 HSP 2 Score: 41.5874 bits (96), Expect = 4.458e-29 Identity = 25/84 (29.76%), Postives = 45/84 (53.57%), Query Frame = 2 Query: 356 PSEDEEAKFXLCKVRSVQFGQKGIPYINTYDGRTI--RYPDP------LIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583 P+E+ + K LCK+++ + G +N +DGR I + DP + K DT+ + + E +I I +VG + +TGG++ Sbjct: 114 PTENPDVK--LCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDVYKTGDTLLISIPEQEIKAHIPFEVGKLAYITGGKH 195 The following BLAST results are available for this feature:
BLAST of CF417639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 97
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417639 ID=CF417639; Name=CF417639; organism=Citrus sinensis; type=EST; length=587bpback to top |