CF417639

Overview
NameCF417639
Unique NameCF417639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length587
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4Y1_GORGO (40S ribosomal protein S4, Y isoform 1 OS=Gorilla gorilla gorilla GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 2.008e-65
Identity = 84/114 (73.68%), Postives = 95/114 (83.33%), Query Frame = 1
Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRI 114          

HSP 2 Score: 93.2041 bits (230), Expect = 2.008e-65
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 2
Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            EEAK+ LCKVR +  G KGIP++ T+D RTIRYPDP+IK  DT+++DL   KI +FI  D GN+ MV GG N
Sbjct:  117 EEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGAN 188          
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 3.414e-65
Identity = 81/114 (71.05%), Postives = 93/114 (81.58%), Query Frame = 1
Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            MARG KKHLKRL APK WMLDKLGG FAP+PS+GPHK RE LPL++ LRNRLKYAL   EV  I+MQR V VDGKVRTD TYPAG+MDV+++ KT E FRL+YD KGRF +H +
Sbjct:    1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRI 114          

HSP 2 Score: 100.908 bits (250), Expect = 3.414e-65
Identity = 43/72 (59.72%), Postives = 57/72 (79.17%), Query Frame = 2
Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            EEAK+ LCKV+  Q G KG+P++ T+DGRTIRYPDPLI A D++++D+   KITD+I  D GN+ M+TGGRN
Sbjct:  117 EEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRN 188          
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4Y1_PONPY (40S ribosomal protein S4, Y isoform 1 OS=Pongo pygmaeus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 4.452e-65
Identity = 83/114 (72.81%), Postives = 94/114 (82.46%), Query Frame = 1
Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +  +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDITYPAGFMDVISIDKTGEHFRLVYDTKGRFAVQRI 114          

HSP 2 Score: 95.5153 bits (236), Expect = 4.452e-65
Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 2
Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            EEAK+ LCKVR +  G KGIP++ T+D RTIRYPDPLIK  DT+++DL   KI +FI  D GN+ MV GG N
Sbjct:  117 EEAKYKLCKVRKITVGMKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKIINFIKFDTGNVCMVIGGAN 188          
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 5.288e-63
Identity = 80/114 (70.18%), Postives = 93/114 (81.58%), Query Frame = 1
Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQ  + +DGKVR D TYPAGF+DV+SI KT E+FRL+Y+TKG F +H +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRI 114          

HSP 2 Score: 94.7449 bits (234), Expect = 5.288e-63
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 2
Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            EEAK+ LCKVR +  G KGIP++ T+D RTIRYPDPLIK  DT+++DL   KIT FI  D GN+ MV  G N
Sbjct:  117 EEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIAGAN 188          
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.529e-62
Identity = 76/114 (66.67%), Postives = 89/114 (78.07%), Query Frame = 1
Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            M RG KKHLKRL AP HWML KL G +AP+PS+GPH  RE LPL + LRNRL YAL  REV AI+MQ+HV V GKVRTD TYPAGFMDV+++  TNE+FRL YD KG+F +H +
Sbjct:    1 MGRGPKKHLKRLAAPSHWMLXKLSGTYAPRPSAGPHXLRESLPLXVFLRNRLXYALCGREVKAIMMQQHVQVVGKVRTDTTYPAGFMDVITLEATNEHFRLAYDVKGKFAVHRI 114          

HSP 2 Score: 100.138 bits (248), Expect = 1.529e-62
Identity = 46/72 (63.89%), Postives = 56/72 (77.78%), Query Frame = 2
Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            EEA + L KV+ VQ G+KG+PY+ T+DGRTIRYPDPLI+A DT+K+DL   KI  FI  D G +VMVTGGRN
Sbjct:  117 EEAVYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPLIRANDTVKIDLATGKIXSFIKFDTGRLVMVTGGRN 188          
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.470e-59
Identity = 70/95 (73.68%), Postives = 79/95 (83.16%), Query Frame = 1
Query:   76 LDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            LDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H +
Sbjct:    1 LDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRI 95          

HSP 2 Score: 100.908 bits (250), Expect = 7.470e-59
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 2
Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            EEAK+ LCKVR +  G KGIP++ T+D RTIRYPDPLIK  DTI++DL   KITDFI  D GN+ MVTGG N
Sbjct:   98 EEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGAN 169          
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 8.816e-57
Identity = 77/113 (68.14%), Postives = 87/113 (76.99%), Query Frame = 1
Query:   25 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLR 363
            RG KKHLKRL AP HWMLDKLGG FA +P+ GPHK RE LPL L LRNRLKYAL Y E   IL QR V VDGKVRT   +P GFMDVV+I +TNE FR+LYDTKGR+ +H ++
Sbjct:    2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQ 114          

HSP 2 Score: 83.9593 bits (206), Expect = 8.816e-57
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 2
Query:  371 EAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            EA F LCKV+SV+   KG+P + T DGRTIRYPDP +K  DTI  ++   KITD +  + GN+  VTGGRN
Sbjct:  117 EADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRN 187          
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 8.187e-35
Identity = 56/114 (49.12%), Postives = 78/114 (68.42%), Query Frame = 1
Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            M  G + HLKR  APK WMLDK GG FA  P+SGPHK  EC+PL  ++   L+YA  ++E+  IL ++++ V+G+VRT+  +P G  DVVSI KT E+FR+LY+   +F LH +
Sbjct:    1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRI 114          

HSP 2 Score: 45.0542 bits (105), Expect = 8.187e-35
Identity = 25/73 (34.25%), Postives = 41/73 (56.16%), Query Frame = 2
Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRNR 586
            EEA + L KV   ++  +GIPYI +  G +IR+ DP I    TIK+    +K+ ++I      ++ V+ G+ R
Sbjct:  117 EEASYRLTKVTK-KYENQGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKAR 188          
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.938e-34
Identity = 77/138 (55.80%), Postives = 94/138 (68.12%), Query Frame = 1
Query:   22 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQR--HVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRG*GGKIXALQS*ISPVWPERYP 429
            ARG KKHLKR+NAPK WML+KLGG +A +PS GPHK RE LPL ++L+ RL YAL  R+V  IL  +  +V VD KVR DK YP G MDVV I KT+++FR+LYDTKGRF L SL     K   L+     + P + P
Sbjct:    1 ARGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEGNVFVDQKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIP 138          

HSP 2 Score: 72.0182 bits (175), Expect = 2.421e-12
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 2
Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            EEAK+ L KV +   G   IPYI T+D RTIR+P+P IK  DT+K DL  NKI +F   + GN+  +  G N
Sbjct:  118 EEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNN 189          
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4E_METJA (30S ribosomal protein S4e OS=Methanocaldococcus jannaschii GN=rps4e PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.458e-29
Identity = 53/109 (48.62%), Postives = 70/109 (64.22%), Query Frame = 1
Query:   25 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRL 351
            +G K+HLKRL AP  W L +    F  +P  G H   E LPL+L++R+ LKYA   RE   I+    VLVDG+VR ++  P G MDVVS+P  NEN+R+L+D KGR +L
Sbjct:    4 KGPKRHLKRLAAPVRWELPRKIHKFTVRPLPGAHPMSESLPLLLIVRDILKYADNAREAKKIIKMGKVLVDGRVRKEEKLPVGLMDVVSLPDANENYRVLFDRKGRIKL 112          

HSP 2 Score: 41.5874 bits (96), Expect = 4.458e-29
Identity = 25/84 (29.76%), Postives = 45/84 (53.57%), Query Frame = 2
Query:  356 PSEDEEAKFXLCKVRSVQFGQKGIPYINTYDGRTI--RYPDP------LIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            P+E+ + K  LCK+++    + G   +N +DGR I  +  DP      + K  DT+ + + E +I   I  +VG +  +TGG++
Sbjct:  114 PTENPDVK--LCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDVYKTGDTLLISIPEQEIKAHIPFEVGKLAYITGGKH 195          
The following BLAST results are available for this feature:
BLAST of CF417639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RS4Y1_GORGO2.008e-6573.6840S ribosomal protein S4, Y isoform 1 OS=Gorilla g... [more]
RS4_DROME3.414e-6571.0540S ribosomal protein S4 OS=Drosophila melanogaste... [more]
RS4Y1_PONPY4.452e-6572.8140S ribosomal protein S4, Y isoform 1 OS=Pongo pyg... [more]
RS4Y2_HUMAN5.288e-6370.1840S ribosomal protein S4, Y isoform 2 OS=Homo sapi... [more]
RS4_CANAL1.529e-6266.6740S ribosomal protein S4 OS=Candida albicans GN=RP... [more]
RS4_HORSE7.470e-5973.6840S ribosomal protein S4 (Fragment) OS=Equus cabal... [more]
RS4_CAEEL8.816e-5768.1440S ribosomal protein S4 OS=Caenorhabditis elegans... [more]
RS4_ENCCU8.187e-3549.1240S ribosomal protein S4 OS=Encephalitozoon cunicu... [more]
RS4_TETTH2.938e-3455.8040S ribosomal protein S4 OS=Tetrahymena thermophil... [more]
RS4E_METJA4.458e-2948.6230S ribosomal protein S4e OS=Methanocaldococcus ja... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-569 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417639 ID=CF417639; Name=CF417639; organism=Citrus sinensis; type=EST; length=587bp
AGCTTCAAACTCACAAAAATGGCTAGAGGATTGAAGAAGCACTTGAAGAG
GCTCAATGCCCCTAAGCACTGGATGCTTGACAAGCTTGGTGGTGCATTTG
CACCTAAGCCATCATCTGGTCCCCACAAGTCAAGGGAATGCTTGCCATTG
ATCCTTGTATTGCGAAACCGTTTGAAATATGCTCTCACATATCGTGAAGT
TATTGCTATTCTGATGCAACGACATGTTCTTGTTGATGGGAAGGTTAGGA
CAGATAAGACCTACCCTGCTGGTTTCATGGATGTTGTGTCAATTCCCAAG
ACCAACGAGAACTTCCGTCTCCTTTATGACACCAAGGGTCGCTTCCGTCT
CCATTCCCTCAGAGGATGAGGAGGCAAAATTCNAGCTTTGCAAAGTTAGA
TCAGTCCAGTTTGGCCAGAAAGGTATCCCATACATCAACACCTATGATGG
GCGTACCATCCGCTACCCTGACCCACTCATCAAAGCCNATGATACCATCA
AACTTGACTTANAAGAGAACAAGATCACTGACTTCATCNAGNTTGATGTT
GGGAATATTGTCATGGTCACTGGGGGTAGAAACAGAG
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