CF503982

Overview
NameCF503982
Unique NameCF503982
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length390
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503982 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.409e-17
Identity = 45/88 (51.14%), Postives = 56/88 (63.64%), Query Frame = 3
Query:  102 TGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLG-------DGP 344
            +G     G L  +ISRE F  +L +RND  CPARGFYTYDAFI AA++FP F  +G++  RKREIAAF AQ + +  G       DGP
Sbjct:   65 SGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGP 152          
BLAST of CF503982 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.840e-17
Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = 3
Query:   69 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARG-FYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLGDGP 344
            C SG        G G  GG++G +IS  MF+ +L +RND  C  +  FY+Y+AFI AA++F GFG +G+ T RKREIAAFFAQ + +  G  P
Sbjct:   58 CPSGPSPKPPTPGPGPSGGDIGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWP 150          
BLAST of CF503982 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.403e-17
Identity = 46/93 (49.46%), Postives = 60/93 (64.52%), Query Frame = 3
Query:   69 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARG-FYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLGDGP 344
            CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +G FY+Y+AFI AA +FPGFG +G+ T RKREIAAFFAQ + +  G  P
Sbjct:   49 CGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWP 140          
BLAST of CF503982 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.403e-17
Identity = 44/103 (42.72%), Postives = 57/103 (55.34%), Query Frame = 3
Query:   54 GSAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLG------DGP 344
            G    C      G      G  G  +  I+SR +F+ +L +RNDA CPA+ FYTYDAF+ AA AFP F  +G+   RKRE+AAF AQ + +  G      DGP
Sbjct:   54 GCQSQCSGSCGGGGPTPPSGGGGSGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGP 156          
BLAST of CF503982 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.139e-17
Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = 3
Query:  111 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLG-----DGP 344
            GT    +G I++ ++F+ +L  RNDARC A  FYTYDAFI AA +FPGFG +G++T RK+EIAAFF Q + +  G     DGP
Sbjct:   20 GTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGTLSPDGP 102          
BLAST of CF503982 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 87.0409 bits (214), Expect = 3.139e-17
Identity = 46/104 (44.23%), Postives = 61/104 (58.65%), Query Frame = 3
Query:   54 GSAQNCGSGVVCGERDTGHG----------TDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLG 335
            GS   CG G  C  + +G G          + GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AF GFG +G    RKRE+AAF AQ + +  G
Sbjct:   44 GSTPYCGDG--CQSQCSGCGGGSTPVTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTG 145          
BLAST of CF503982 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.099e-17
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 3
Query:  120 GGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLG 335
            GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AFPGFG +G+   RKRE+AAF AQ + +  G
Sbjct:   77 GGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTG 148          
BLAST of CF503982 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.354e-17
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 3
Query:  135 KIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLGDGP 344
            KIISR MF+ +L +RN+  CPA+GFYTYDAF+ AA++FP FG +G+  +RKRE+AAF  Q + +  G  P
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWP 73          
BLAST of CF503982 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.992e-17
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 3
Query:  111 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLG 335
            GT  G +  I+SR  F+ +L +RND  C A+GFYTYDAF+ AA AFPGFG +G+   +KRE+AAF AQ + +  G
Sbjct:   19 GTARGSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTG 93          
BLAST of CF503982 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.034e-16
Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = 3
Query:  111 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLG 335
            GT  G +  IIS   F+ +L +RND  C A+GFYTYDAF+ AA AFPGFG +G+   RKR++AAF AQ + +  G
Sbjct:   19 GTAHGSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTG 93          
The following BLAST results are available for this feature:
BLAST of CF503982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CHI1_GOSHI1.409e-1751.14Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI4_SOLTU1.840e-1747.31Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_SOLTU2.403e-1749.46Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_ORYSJ2.403e-1742.72Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_PETHY3.139e-1751.81Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI1_HORVU3.139e-1744.2326 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIA_SECCE4.099e-1754.17Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHIT_CARPA5.354e-1754.29Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI2_HORVU6.992e-1752.0026 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIC_SECCE2.034e-1652.00Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-470 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503982 ID=CF503982; Name=CF503982; organism=Citrus sinensis; type=EST; length=390bp
GGCTCATTGGGTCCTTACTAATTTTCTCTCTAGTTTTATCTTTTGTACTA
GGAGGTTCAGCACAGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGA
TACTGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGG
AGATGTTTGAAGACTTGCTTCCGTATAGAAATGATGCCCGATGCCCTGCC
AGAGGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCCAAGCTTTTCC
AGGCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTG
CCTTTTTTGCCCAACTGGCCATGAAACTACTGGGGGATGGACCGATGCAC
CTGGTGGAGAATATGCTTGGGGATATTGCTATATTAGGCA
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