CF504011

Overview
NameCF504011
Unique NameCF504011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP448_ARATH (Pentatricopeptide repeat-containing protein At5g66500, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E38 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.199e-31
Identity = 74/181 (40.88%), Postives = 105/181 (58.01%), Query Frame = 1
Query:   25 DMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRM--EQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEKFGLVPVMEHYAC 561
            D V   +L++   +   ++EA  + S+ R     PN   +SS L  C+    L  G+Q+H +  + G  +D ++ + L+DMY KCG I +A  IF  I +   VSWT++I  YA +G    AL++FR M  E  GV PNSVTFL V+ AC+H GLV+EG   F  M+EK+ LVP  EHY C
Sbjct:  250 DEVMLNSLISGCIRNRNYKEAFLLMSRQR-----PNVRVLSSSLAGCSDNSDLWIGKQIHCVALRNGFVSDSKLCNGLMDMYGKCGQIVQARTIFRAIPSKSVVSWTSMIDAYAVNGDGVKALEIFREMCEEGSGVLPNSVTFLVVISACAHAGLVKEGKECFGMMKEKYRLVPGTEHYVC 425          

HSP 2 Score: 101.679 bits (252), Expect = 2.694e-21
Identity = 51/165 (30.91%), Postives = 97/165 (58.79%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEG 495
            +FD + +RD+ S  + +++H +     + LA+F Q+       +  T + VL +C+ L + + GRQVH+L  K G +T    ++AL+DMY+K G++ ++V +FE +   D VSW A++SG+ ++G  + AL +F  M +  V+ +  T   V+  C+   ++++G
Sbjct:   40 LFDELPQRDLSSLNSQLSSHLRSGNPNDTLALFLQIHRASPDLSSHTFTPVLGACSLLSYPETGRQVHALMIKQGAETGTISKTALIDMYSKYGHLVDSVRVFESVEEKDLVSWNALLSGFLRNGKGKEALGVFAAMYRERVEISEFTLSSVVKTCASLKILQQG 204          

HSP 3 Score: 79.337 bits (194), Expect = 1.432e-14
Identity = 49/158 (31.01%), Postives = 86/158 (54.43%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERIS-NPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACS 471
            VF+ + E+D+VSW  L++   +  + +EAL +F+ M  E    ++FT+SSV+ +CA L  L  G+QVH++   TG D    + +A++  Y+  G I+EA+ ++  ++ + D V   ++ISG  ++   + A  L  R      +PN       L  CS
Sbjct:  141 VFESVEEKDLVSWNALLSGFLRNGKGKEALGVFAAMYRERVEISEFTLSSVVKTCASLKILQQGKQVHAMVVVTGRDL-VVLGTAMISFYSSVGLINEAMKVYNSLNVHTDEVMLNSLISGCIRNRNYKEAFLLMSRQ-----RPNVRVLSSSLAGCS 292          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PPR88_ARATH (Pentatricopeptide repeat-containing protein At1g62260, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E10 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.872e-31
Identity = 67/188 (35.64%), Postives = 113/188 (60.11%), Query Frame = 1
Query:    4 FDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERIS-NPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEKFGLVPVMEHYACI 564
            F++  E+  VSW +++ A+ +  +++EA+ +F +M  E   P+  T++S+L +  GL  L  G Q+H +  KT +  D  + +AL+ MY++CG I E+  IF+ +    + ++W A+I GYA HG +  AL LF  M+  G+ P+ +TF+ VL AC+H GLV+E    F  M   + + P MEHY+ +
Sbjct:  366 FEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMNIEGEKPDPHTLTSLLSASTGLVNLRLGMQMHQIVVKTVIP-DVPVHNALITMYSRCGEIMESRRIFDEMKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACAHAGLVDEAKAQFVSMMSVYKIEPQMEHYSSL 552          

HSP 2 Score: 74.7146 bits (182), Expect = 3.527e-13
Identity = 46/155 (29.68%), Postives = 83/155 (53.55%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFA 465
            +F+++  R+ V+W T+++ + +  E  +A  +F  M + +       IS   VSC G+ FL+  R++    F      D    + ++  YAK   I EA+++FE++   + VSW+A+I+G+ Q+G  ++A+ LFR+M      P     LC L A
Sbjct:   62 IFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVMPKRDVVTWNTMISGY-VSCGGIRFLEEARKL----FDEMPSRDSFSWNTMISGYAKNRRIGEALLLFEKMPERNAVSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSP-----LCALVA 206          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP267_ARATH (Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.872e-31
Identity = 67/192 (34.90%), Postives = 107/192 (55.73%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEE---FSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQE-KFGLVPVMEHYACI 564
            VFD + +RD VSW  L + + +     + L +F +M+ +      P+  T    L +CA L  LDFG+QVH    + GL     + + L+ MY++CG++ +A  +F  +   + VSWTA+ISG A +G  + A++ F  M + G+ P   T   +L ACSH GLV EG+  F +M+  +F + P + HY C+
Sbjct:  170 VFDEIPKRDTVSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCV 361          

HSP 2 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 50/161 (31.06%), Postives = 79/161 (49.07%), Query Frame = 1
Query:   43 TLVTAHSQCSEWEEALAIFSQMREEEFSP-NQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRME---QLGVKPNSVTFLCVLFACSHGGLVEEG--LHHF 507
            T++ A S      E   +F  +R     P N  + S  L  C     L  G Q+H   F  G  +D  + + L+D+Y+ C N ++A  +F+ I   DTVSW  + S Y ++  + + L LF +M+      VKP+ VT L  L AC++ G ++ G  +H F
Sbjct:   82 TMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDF 242          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP202_ARATH (Pentatricopeptide repeat-containing protein At2g45350, chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 2.872e-31
Identity = 72/189 (38.10%), Postives = 112/189 (59.26%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQM-REEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEKFGLVPVMEHYACI 564
            +FD+M  RD+V++ +++  + Q     EAL IFS M +E    P+  T+  VL + A L  L     +H    +       ++  AL+DMY+KCG+I  A+++FE I N     W A+I G A HGL E+A  +  ++E+L +KP+ +TF+ VL ACSH GLV+EGL  F+ M+ K  + P ++HY C+
Sbjct:  305 LFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCM 493          

HSP 2 Score: 83.5741 bits (205), Expect = 7.592e-16
Identity = 43/129 (33.33%), Postives = 75/129 (58.14%), Query Frame = 1
Query:   25 DMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRM 411
            D   W  ++ +HS   +  +AL +   M E   S ++F++S VL +C+ L F+  G Q+H    KTGL +D  +++ L+ +Y KCG +  +  +F+R+   D+VS+ ++I GY + GL  +A +LF  M
Sbjct:   85 DPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLM 213          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP159_ARATH (Pentatricopeptide repeat-containing protein At2g17210 OS=Arabidopsis thaliana GN=PCMP-E77 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 2.872e-31
Identity = 73/189 (38.62%), Postives = 115/189 (60.85%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLD-TDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEKFGLVPVMEHYACI 564
            V D M  +D+VS +T+++  +     +EA++IF  MR+   +PN  T+ S+L +C+    L   +  H +  +  L   D  + ++++D YAKCG I  A   F++I+  + +SWT IIS YA +GL + AL LF  M+Q G  PN+VT+L  L AC+HGGLV++GL  F+ M E+    P ++HY+CI
Sbjct:  406 VLDSMTYKDVVSCSTMISGLAHAGRSDEAISIFCHMRD---TPNAITVISLLNACSVSADLRTSKWAHGIAIRRSLAINDISVGTSIVDAYAKCGAIEMARRTFDQITEKNIISWTVIISAYAINGLPDKALALFDEMKQKGYTPNAVTYLAALSACNHGGLVKKGLMIFKSMVEE-DHKPSLQHYSCI 590          

HSP 2 Score: 96.2857 bits (238), Expect = 1.132e-19
Identity = 50/158 (31.65%), Postives = 91/158 (57.59%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQM-REEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLD-TDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFAC 468
            +FD M ERD++SW+ ++ ++ Q  E    L +F +M  E +  P+  T++SVL +C  +  +D GR VH    + G D  D  + ++L+DMY+K  ++  A  +F+  +  + VSW +I++G+  +   + AL++F  M Q  V+ + VT + +L  C
Sbjct:  202 LFDEMSERDVISWSVVIRSYVQSKEPVVGLKLFKEMVHEAKTEPDCVTVTSVLKACTVMEDIDVGRSVHGFSIRRGFDLADVFVCNSLIDMYSKGFDVDSAFRVFDETTCRNIVSWNSILAGFVHNQRYDEALEMFHLMVQEAVEVDEVTVVSLLRVC 359          

HSP 3 Score: 80.1073 bits (196), Expect = 8.394e-15
Identity = 51/157 (32.48%), Postives = 80/157 (50.96%), Query Frame = 1
Query:    4 FDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRM-EQLGVKPNSVTFLCVLFACS 471
            FD M  RD VSW  +V         EE L  FS++R   F PN  T+  V+ +C  L F   G ++H    ++G      +++++L MYA   ++S A  +F+ +S  D +SW+ +I  Y Q       L+LF+ M  +   +P+ VT   VL AC+
Sbjct:  105 FDCMNSRDSVSWNVIVFGLLDYGFEEEGLWWFSKLRVWGFEPNTSTLVLVIHACRSLWF--DGEKIHGYVIRSGFCGISSVQNSILCMYADSDSLS-ARKLFDEMSERDVISWSVVIRSYVQSKEPVVGLKLFKEMVHEAKTEPDCVTVTSVLKACT 258          

HSP 4 Score: 77.411 bits (189), Expect = 5.441e-14
Identity = 44/157 (28.03%), Postives = 82/157 (52.23%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACS 471
            VFD    R++VSW +++        ++EAL +F  M +E    ++ T+ S+L  C         + +H +  + G ++++   S+L+D Y  C  + +A  + + ++  D VS + +ISG A  G S+ A+ +F  M      PN++T + +L ACS
Sbjct:  305 VFDETTCRNIVSWNSILAGFVHNQRYDEALEMFHLMVQEAVEVDEVTVVSLLRVCKFFEQPLPCKSIHGVIIRRGYESNEVALSSLIDAYTSCSLVDDAGTVLDSMTYKDVVSCSTMISGLAHAGRSDEAISIFCHMRD---TPNAITVISLLNACS 458          

HSP 5 Score: 76.6406 bits (187), Expect = 9.281e-14
Identity = 43/169 (25.44%), Postives = 80/169 (47.34%), Query Frame = 1
Query:   61 SQCSEWEEALAIFSQMREEEFSPNQ-FTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEKFGLVPVMEHYACI 564
            S   +W E ++ +S+++      N  F    V  +CA L +L  GR + +   K G ++   + +++ D Y KCG++   +  F+ +++ D+VSW  I+ G   +G  E  L  F ++   G +PN+ T + V+ AC       E +H +       G+  V     C+
Sbjct:   22 SVSGKWREVVSGYSEIQRAGVQFNDPFVFPIVFKACAKLSWLFQGRCIQASLLKRGFESFVSVGNSIADFYMKCGDLCSGLREFDCMNSRDSVSWNVIVFGLLDYGFEEEGLWWFSKLRVWGFEPNTSTLVLVIHACRSLWFDGEKIHGYVIRSGFCGISSVQNSILCM 190          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP430_ARATH (Pentatricopeptide repeat-containing protein At5g52850, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H31 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.750e-31
Identity = 65/185 (35.14%), Postives = 110/185 (59.46%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEKFGLVPVMEHY 555
            V   M  RD +++T+LVT  ++  + E AL++ + M  +    +Q ++   + + A L  L+ G+ +H    K+G      + ++L+DMY+KCG++ +A  +FE I+ PD VSW  ++SG A +G   +AL  F  M     +P+SVTFL +L ACS+G L + GL +FQ M++ + + P +EHY
Sbjct:  484 VIRSMKRRDNITYTSLVTRFNELGKHEMALSVINYMYGDGIRMDQLSLPGFISASANLGALETGKHLHCYSVKSGFSGAASVLNSLVDMYSKCGSLEDAKKVFEEIATPDVVSWNGLVSGLASNGFISSALSAFEEMRMKETEPDSVTFLILLSACSNGRLTDLGLEYFQVMKKIYNIEPQVEHY 668          

HSP 2 Score: 126.716 bits (317), Expect = 7.820e-29
Identity = 63/161 (39.13%), Postives = 94/161 (58.39%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGL 483
            +FD M  R + +WT +++A ++  E+  AL++F +M      PN+FT SSV+ SCAGL  + +G +VH    KTG + +  + S+L D+Y+KCG   EA  +F  + N DT+SWT +IS          ALQ +  M + GV PN  TF+ +L A S  GL
Sbjct:   80 LFDEMSHRTVFAWTVMISAFTKSQEFASALSLFEEMMASGTHPNEFTFSSVVRSCAGLRDISYGGRVHGSVIKTGFEGNSVVGSSLSDLYSKCGQFKEACELFSSLQNADTISWTMMISSLVGARKWREALQFYSEMVKAGVPPNEFTFVKLLGASSFLGL 240          

HSP 3 Score: 111.309 bits (277), Expect = 3.400e-24
Identity = 59/158 (37.34%), Postives = 89/158 (56.33%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKC-GNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACS 471
            V +  GE+D+  WT++V+   +    +EA+  F +MR     PN FT S++L  C+ +  LDFG+Q+HS   K G +    + +AL+DMY KC  +  EA  +F  + +P+ VSWT +I G   HG  ++   L   M +  V+PN VT   VL ACS
Sbjct:  281 VLNSSGEQDVFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLQPNNFTYSAILSLCSAVRSLDFGKQIHSQTIKVGFEDSTDVGNALVDMYMKCSASEVEASRVFGAMVSPNVVSWTTLILGLVDHGFVQDCFGLLMEMVKREVEPNVVTLSGVLRACS 438          

HSP 4 Score: 94.3597 bits (233), Expect = 4.301e-19
Identity = 43/157 (27.39%), Postives = 86/157 (54.78%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACS 471
            +F  +   D +SWT ++++     +W EAL  +S+M +    PN+FT   +L   +    L+FG+ +HS     G+  +  ++++L+D Y++   + +AV +       D   WT+++SG+ ++  ++ A+  F  M  LG++PN+ T+  +L  CS
Sbjct:  181 LFSSLQNADTISWTMMISSLVGARKWREALQFYSEMVKAGVPPNEFTFVKLL-GASSFLGLEFGKTIHSNIIVRGIPLNVVLKTSLVDFYSQFSKMEDAVRVLNSSGEQDVFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLQPNNFTYSAILSLCS 336          

HSP 5 Score: 68.9366 bits (167), Expect = 1.935e-11
Identity = 39/167 (23.35%), Postives = 83/167 (49.70%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLH 501
            VF  M   ++VSWTTL+         ++   +  +M + E  PN  T+S VL +C+ L  +    ++H+   +  +D +  + ++L+D YA    +  A  +   +   D +++T++++ + + G  E AL +   M   G++ + ++    + A ++ G +E G H
Sbjct:  383 VFGAMVSPNVVSWTTLILGLVDHGFVQDCFGLLMEMVKREVEPNVVTLSGVLRACSKLRHVRRVLEIHAYLLRRHVDGEMVVGNSLVDAYASSRKVDYAWNVIRSMKRRDNITYTSLVTRFNELGKHEMALSVINYMYGDGIRMDQLSLPGFISASANLGALETGKH 549          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP200_ARATH (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.750e-31
Identity = 64/185 (34.59%), Postives = 112/185 (60.54%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEKFGLVPVMEHY 555
            +FD M +R+ VSW ++++   +   +++AL +F +M+E++  P+ FT+ S+L +CA L   + GR +H    +   + +  + +AL+DMY KCG I E + +FE         W ++I G A +G  E A+ LF  +E+ G++P+SV+F+ VL AC+H G V      F+ M+EK+ + P ++HY
Sbjct:  214 LFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIKHY 398          

HSP 2 Score: 89.3521 bits (220), Expect = 1.384e-17
Identity = 61/197 (30.96%), Postives = 96/197 (48.73%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQM--REEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEK------FGLVPVMEHYACIG 567
            VF R+  ++   W T++   S+ S  E A++IF  M        P + T  SV  +   L     GRQ+H +  K GL+ D  I + +L MY  CG + EA  IF  +   D V+W ++I G+A+ GL + A  LF  M Q     N V++  ++      G  ++ L  F++MQEK      F +V ++   A +G
Sbjct:   80 VFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQ----RNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLG 272          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP319_ARATH (Pentatricopeptide repeat-containing protein At4g18520 OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.898e-31
Identity = 69/168 (41.07%), Postives = 109/168 (64.88%), Query Frame = 1
Query:    4 FDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGG--LVEEGLH 501
            FD M E+D++SWT +++A S+     +A+ +F  M    F PN+FT+ S+L +C+    L FGRQVHSL  K  + TD  + ++L+DMYAKCG IS+   +F+ +SN +TV+WT+II+ +A+ G  E A+ LFR M++  +  N++T + +L AC   G  L+ + LH
Sbjct:  241 FDMMEEKDVISWTAVISACSRKGHGIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKELH 408          

HSP 2 Score: 114.005 bits (284), Expect = 5.245e-25
Identity = 60/156 (38.46%), Postives = 87/156 (55.77%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFAC 468
            V  ++  RD+VSWT +++  S      EAL    +M +E   PN FT SS L +CA    L  GR +HS+  K    ++  + SAL+ MYAKCG +SEA  +F+ +   + VSW A+I GYA++G    AL+L  RME  G + +   F  +L  C
Sbjct:  442 VLQQLPSRDVVSWTAMISGCSSLGHESEALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYARNGFCREALKLMYRMEAEGFEVDDYIFATILSTC 597          

HSP 3 Score: 110.923 bits (276), Expect = 4.441e-24
Identity = 54/158 (34.18%), Postives = 91/158 (57.59%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSH 474
            VFD M  R+ V+WT+++ AH++    EEA+++F  M+      N  T+ S+L +C  +  L  G+++H+   K  ++ +  I S L+ +Y KCG   +A  + +++ + D VSWTA+ISG +  G    AL   + M Q GV+PN  T+   L AC++
Sbjct:  341 VFDGMSNRNTVTWTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEALDFLKEMIQEGVEPNPFTYSSALKACAN 498          

HSP 4 Score: 84.3445 bits (207), Expect = 4.451e-16
Identity = 51/161 (31.68%), Postives = 82/161 (50.93%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCF----LDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACS 471
            VFD M E++ V+WT ++  + +    +EA A+F    +      +FT   + V    LC      + GRQVH    K G+  +  +ES+L+  YA+CG ++ A+  F+ +   D +SWTA+IS  ++ G    A+ +F  M      PN  T   +L ACS
Sbjct:  139 VFDSMPEKNTVTWTAMIDGYLKYGLEDEAFALFEDYVKHGI---RFTNERMFVCLLNLCSRRAEFELGRQVHGNMVKVGVG-NLIVESSLVYFYAQCGELTSALRAFDMMEEKDVISWTAVISACSRKGHGIKAIGMFIGMLNHWFLPNEFTVCSILKACS 295          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP256_ARATH (Pentatricopeptide repeat-containing protein At3g26540 OS=Arabidopsis thaliana GN=PCMP-A5 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.898e-31
Identity = 68/188 (36.17%), Postives = 108/188 (57.45%), Query Frame = 1
Query:    4 FDRMGE-RDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEKFGLVPVMEHYACI 564
            F +M E RD VSW  L+T  ++    E+AL+ F  M+ E   P+++T++++L  CA +  L+ G+ +H    + G   D  I  A++DMY+KC     A+ +F+  +  D + W +II G  ++G S+   +LF  +E  GVKP+ VTFL +L AC   G VE G  +F  M  K+ + P +EHY C+
Sbjct:  453 FRQMSELRDEVSWNALLTGVARVGRSEQALSFFEGMQVEA-KPSKYTLATLLAGCANIPALNLGKAIHGFLIRDGYKIDVVIRGAMVDMYSKCRCFDYAIEVFKEAATRDLILWNSIIRGCCRNGRSKEVFELFMLLENEGVKPDHVTFLGILQACIREGHVELGFQYFSSMSTKYHISPQVEHYDCM 639          

HSP 2 Score: 113.235 bits (282), Expect = 8.947e-25
Identity = 62/177 (35.03%), Postives = 98/177 (55.37%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISN-PDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACS-----------HGGLVEEG 495
            +FD M ER++VSW  ++  +    EW+EAL   + MR+E  + +  T+  +L  C+G+  +  G+Q H   ++ G DT+  + +ALLDMY KCG +  A + F ++S   D VSW A+++G A+ G SE AL  F  M Q+  KP+  T   +L  C+           HG L+ +G
Sbjct:  351 LFDLMPERNIVSWNAMLGGYVHAHEWDEALDFLTLMRQEIENIDNVTLVWILNVCSGISDVQMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQMSELRDEVSWNALLTGVARVGRSEQALSFFEGM-QVEAKPSKYTLATLLAGCANIPALNLGKAIHGFLIRDG 526          

HSP 3 Score: 101.293 bits (251), Expect = 3.518e-21
Identity = 53/165 (32.12%), Postives = 90/165 (54.55%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEG 495
            +F+ M ERD  SW  ++TA +Q    +E   +F +M  +     + + + VL SC  +  L   RQ+H    K G   +  +E++++D+Y KC  +S+A  +F+ I NP  VSW  I+  Y + G ++ A+ +F +M +L V+P + T   V+ ACS    +E G
Sbjct:  118 LFEEMPERDGGSWNAVITACAQNGVSDEVFRMFRRMNRDGVRATETSFAGVLKSCGLILDLRLLRQLHCAVVKYGYSGNVDLETSIVDVYGKCRVMSDARRVFDEIVNPSDVSWNVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHTVSSVMLACSRSLALEVG 282          

HSP 4 Score: 92.4337 bits (228), Expect = 1.634e-18
Identity = 51/175 (29.14%), Postives = 91/175 (52.00%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEK 525
            VFD +     VSW  +V  + +    +EA+ +F +M E    P   T+SSV+++C+    L+ G+ +H++  K  +  D  + +++ DMY KC  +  A  +F++  + D  SWT+ +SGYA  GL+  A +LF  M +     N V++  +L    H    +E L     M+++
Sbjct:  219 VFDEIVNPSDVSWNVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHTVSSVMLACSRSLALEVGKVIHAIAVKLSVVADTVVSTSVFDMYVKCDRLESARRVFDQTRSKDLKSWTSAMSGYAMSGLTREARELFDLMPE----RNIVSWNAMLGGYVHAHEWDEALDFLTLMRQE 389          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP219_ARATH (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.397e-31
Identity = 69/188 (36.70%), Postives = 110/188 (58.51%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEKFGLVPVMEHYACI 564
            VFD M E+D+V+W+T++  ++  S  +E + +F QM +E   P+QF+I   L SCA L  LD G    SL  +    T+  + +AL+DMYAKCG ++    +F+ +   D V   A ISG A++G  + +  +F + E+LG+ P+  TFL +L  C H GL+++GL  F  +   + L   +EHY C+
Sbjct:  269 VFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCM 456          

HSP 2 Score: 94.3597 bits (233), Expect = 4.301e-19
Identity = 45/165 (27.27%), Postives = 90/165 (54.55%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEG 495
            +FD + +R +V+WT L + ++      EA+ +F +M E    P+ + I  VL +C  +  LD G  +     +  +  +  + + L+++YAKCG + +A  +F+ +   D V+W+ +I GYA +   +  ++LF +M Q  +KP+  + +  L +C+  G ++ G
Sbjct:  168 LFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLG 332          

HSP 3 Score: 90.8929 bits (224), Expect = 4.755e-18
Identity = 49/149 (32.89%), Postives = 80/149 (53.69%), Query Frame = 1
Query:   76 WEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQE 522
            + E L +F  +R+     + FT   VL +C        G  +HSL  K G + D    ++LL +Y+  G +++A  +F+ I +   V+WTA+ SGY   G    A+ LF++M ++GVKP+S   + VL AC H G ++ G    + M+E
Sbjct:   92 FHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEE 240          
The following BLAST results are available for this feature:
BLAST of CF504011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
PP448_ARATH2.199e-3140.88Pentatricopeptide repeat-containing protein At5g66... [more]
PPR88_ARATH2.872e-3135.64Pentatricopeptide repeat-containing protein At1g62... [more]
PP267_ARATH2.872e-3134.90Pentatricopeptide repeat-containing protein At3g47... [more]
PP202_ARATH2.872e-3138.10Pentatricopeptide repeat-containing protein At2g45... [more]
PP159_ARATH2.872e-3138.62Pentatricopeptide repeat-containing protein At2g17... [more]
PP430_ARATH3.750e-3135.14Pentatricopeptide repeat-containing protein At5g52... [more]
PP200_ARATH3.750e-3134.59Pentatricopeptide repeat-containing protein At2g42... [more]
PP319_ARATH4.898e-3141.07Pentatricopeptide repeat-containing protein At4g18... [more]
PP256_ARATH4.898e-3136.17Pentatricopeptide repeat-containing protein At3g26... [more]
PP219_ARATH6.397e-3136.70Putative pentatricopeptide repeat-containing prote... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-499 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504011 ID=CF504011; Name=CF504011; organism=Citrus sinensis; type=EST; length=568bp
GTTTTTGACAGGATGGGGGAGAGAGATATGGTGTCTTGGACAACTCTTGT
GACTGCTCACTCTCAATGTTCTGAATGGGAGGAAGCACTTGCGATTTTTT
CCCAAATGAGGGAGGAAGAATTTAGTCCTAACCAGTTCACAATTTCCAGT
GTTCTTGTATCTTGTGCTGGCCTTTGTTTTCTAGATTTTGGTCGGCAAGT
TCATAGTCTTTGTTTCAAGACTGGGTTGGACACTGACAAGCGCATAGAAA
GTGCTTTGTTGGACATGTATGCCAAATGTGGCAATATAAGTGAGGCAGTG
ATGATATTTGAAAGGATTTCCAACCCTGATACTGTTTCATGGACAGCTAT
AATATCGGGTTATGCCCAGCACGGTCTCTCGGAAAATGCCCTTCAACTCT
TTAGAAGAATGGAACAGTTGGGTGTGAAGCCTAACTCTGTTACCTTTCTC
TGTGTTCTGTTTGCTTGCAGCCATGGAGGACTGGTAGAGGAAGGCCTGCA
CCATTTTCAACAAATGCAGGAAAAATTTGGTCTGGTGCCAGTGATGGAAC
ATTATGCTTGTATTGGTG
back to top