CF504011
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PPR49_ARATH (Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.026e-12 Identity = 44/169 (26.04%), Postives = 88/169 (52.07%), Query Frame = 1 Query: 31 VSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIF----ERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEK 525 V++ L+ ++ + + EA+ +F+QM+E P++ T +++ A FLD ++ GL D S +++ K G++ A +F ++ P+ V++ ++ +A+ +NAL+L+R M+ G +P+ VT+ V+ H G +EE F +MQ+K Sbjct: 400 VTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQK 568
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP183_ARATH (Pentatricopeptide repeat-containing protein At2g34370, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H25 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.026e-12 Identity = 46/173 (26.59%), Postives = 83/173 (47.98%), Query Frame = 1 Query: 43 TLVTAHSQCSEWE--EALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEKFGLVPVMEHY 555 T+ T + C + + EAL + + ++ + + + + C + L+ R VH D R +++MY+ C + +A+ +F + ++ +W +I A++G E A+ +F R + G KP+ F V FAC G + EGL HF+ M +G+V ME Y Sbjct: 80 TIETFDALCKQVKIREALEVIDILEDKGYIVDFPRLLGLAKLCGEVEALEEARVVHDCI----TPLDARSYHTVIEMYSGCRSTDDALNVFNEMPKRNSETWGTMIRCLAKNGEGERAIDMFTRFIEEGNKPDKEIFKAVFFACVSIGDINEGLLHFESMYRDYGMVLSMEDY 248
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PPR12_ARATH (Pentatricopeptide repeat-containing protein At1g05665, mitochondrial OS=Arabidopsis thaliana GN=At1g05665 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 3.899e-12 Identity = 42/145 (28.97%), Postives = 74/145 (51.03%), Query Frame = 1 Query: 25 DMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIF----ERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTF 447 D++S++T+V + + E ++ + M+ + PN + S++ +C L + S + G+ D + + L+D + K G+I A F R PD +++TAIISG+ Q G A +LF M G++P+SVTF Sbjct: 280 DVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTF 424
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP362_ARATH (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.092e-12 Identity = 38/152 (25.00%), Postives = 75/152 (49.34%), Query Frame = 1 Query: 76 WEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERIS----NPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQ 519 W + ++ +M+ + +P+ +T ++++ C QV G DK +ALLD+Y K EA+ + + +P V++ ++IS YA+ G+ + A++L +M + G KP+ T+ +L G VE + F++M+ Sbjct: 260 WNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMR 411
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PPR94_ARATH (Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11 Identity = 51/182 (28.02%), Postives = 96/182 (52.75%), Query Frame = 1 Query: 19 ERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGR-----QVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFE----RISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEKFGLV 537 E D+V + T++ + ++AL +F++M + P+ FT SS L+SC LC ++GR ++ S + ++ + SAL+D + K G + EA +++ R +PD +++++I+G+ H + A +F M PN VT+ ++ VEEG+ F++M ++ GLV Sbjct: 255 EADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSS-LISC--LC--NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQR-GLV 430
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP161_ARATH (Pentatricopeptide repeat-containing protein At2g17670 OS=Arabidopsis thaliana GN=At2g17670 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.301e-11 Identity = 44/172 (25.58%), Postives = 85/172 (49.42%), Query Frame = 1 Query: 25 DMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQ---VHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISN----PDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQ 519 D+VS+T L+ EA+ + S++ F P+ F ++++ G C L G + V+ + G++ D+ + L+ +K G + EA M + + + PDT ++T++++G + G S AL L ME G PN T+ +L L+++G+ ++ M+ Sbjct: 229 DLVSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIM---KGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMK 397
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PPR9_ARATH (Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11 Identity = 45/176 (25.57%), Postives = 86/176 (48.86%), Query Frame = 1 Query: 19 ERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCF---LDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISN----PDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEK 525 E D +++ T++ A S++ +A++ +M E+ S V+ GLC L+ G V + G + I + L+D YAK G++ +A+ + R+ + PD V+++ +++G ++G E AL F G+ NS+ + ++ G V+E F++M EK Sbjct: 289 EADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVI---GGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEK 461
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PPR96_ARATH (Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11 Identity = 48/182 (26.37%), Postives = 92/182 (50.55%), Query Frame = 1 Query: 19 ERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGR-----QVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFE----RISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEKFGLV 537 E D+V +TT++ A +AL +F++M + PN T +S++ C ++GR ++ S + ++ + SAL+D + K G + EA +++ R +PD +++++I+G+ H + A +F M PN VT+ ++ VEEG+ F++M ++ GLV Sbjct: 252 EADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI-----RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQR-GLV 427
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP247_ARATH (Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11 Identity = 44/188 (23.40%), Postives = 89/188 (47.34%), Query Frame = 1 Query: 25 DMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISN----PDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEK-----FGLVPVMEHYAC 561 D+V+++ L+ + + EA ++++M +P+ T +S++ L Q+ L G + D S L++ Y K + + + +F IS+ P+T+++ ++ G+ Q G A +LF+ M GV P+ VT+ +L G + + L F++MQ+ G+ ++ H C Sbjct: 314 DVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMC 501
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP432_ARATH (Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2) HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11 Identity = 36/166 (21.69%), Postives = 84/166 (50.60%), Query Frame = 1 Query: 31 VSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERIS----NPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQM 516 V++ L+ H ++EAL +F M + +P++ + +L D R + + G+ + + ++D K G + EAV++ +S +PD V+++A+I+G+ + G + A ++ R+ ++G+ PN + + +++ C G ++E + ++ M Sbjct: 334 VTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAM 499 The following BLAST results are available for this feature:
BLAST of CF504011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 212
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504011 ID=CF504011; Name=CF504011; organism=Citrus sinensis; type=EST; length=568bpback to top |