CF504011

Overview
NameCF504011
Unique NameCF504011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PPR49_ARATH (Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.026e-12
Identity = 44/169 (26.04%), Postives = 88/169 (52.07%), Query Frame = 1
Query:   31 VSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIF----ERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEK 525
            V++  L+ ++ + +   EA+ +F+QM+E    P++ T  +++   A   FLD    ++      GL  D    S +++   K G++  A  +F    ++   P+ V++  ++  +A+    +NAL+L+R M+  G +P+ VT+  V+    H G +EE    F +MQ+K
Sbjct:  400 VTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQK 568          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP183_ARATH (Pentatricopeptide repeat-containing protein At2g34370, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H25 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.026e-12
Identity = 46/173 (26.59%), Postives = 83/173 (47.98%), Query Frame = 1
Query:   43 TLVTAHSQCSEWE--EALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEKFGLVPVMEHY 555
            T+ T  + C + +  EAL +   + ++ +  +   +  +   C  +  L+  R VH          D R    +++MY+ C +  +A+ +F  +   ++ +W  +I   A++G  E A+ +F R  + G KP+   F  V FAC   G + EGL HF+ M   +G+V  ME Y
Sbjct:   80 TIETFDALCKQVKIREALEVIDILEDKGYIVDFPRLLGLAKLCGEVEALEEARVVHDCI----TPLDARSYHTVIEMYSGCRSTDDALNVFNEMPKRNSETWGTMIRCLAKNGEGERAIDMFTRFIEEGNKPDKEIFKAVFFACVSIGDINEGLLHFESMYRDYGMVLSMEDY 248          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PPR12_ARATH (Pentatricopeptide repeat-containing protein At1g05665, mitochondrial OS=Arabidopsis thaliana GN=At1g05665 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.899e-12
Identity = 42/145 (28.97%), Postives = 74/145 (51.03%), Query Frame = 1
Query:   25 DMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIF----ERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTF 447
            D++S++T+V  + +  E ++   +   M+ +   PN +   S++     +C L    +  S   + G+  D  + + L+D + K G+I  A   F     R   PD +++TAIISG+ Q G    A +LF  M   G++P+SVTF
Sbjct:  280 DVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTF 424          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP362_ARATH (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.092e-12
Identity = 38/152 (25.00%), Postives = 75/152 (49.34%), Query Frame = 1
Query:   76 WEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERIS----NPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQ 519
            W +  ++  +M+ +  +P+ +T ++++  C          QV       G   DK   +ALLD+Y K     EA+ +   +     +P  V++ ++IS YA+ G+ + A++L  +M + G KP+  T+  +L      G VE  +  F++M+
Sbjct:  260 WNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMR 411          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PPR94_ARATH (Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11
Identity = 51/182 (28.02%), Postives = 96/182 (52.75%), Query Frame = 1
Query:   19 ERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGR-----QVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFE----RISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEKFGLV 537
            E D+V + T++    +    ++AL +F++M  +   P+ FT SS L+SC  LC  ++GR     ++ S   +  ++ +    SAL+D + K G + EA  +++    R  +PD  +++++I+G+  H   + A  +F  M      PN VT+  ++        VEEG+  F++M ++ GLV
Sbjct:  255 EADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSS-LISC--LC--NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQR-GLV 430          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP161_ARATH (Pentatricopeptide repeat-containing protein At2g17670 OS=Arabidopsis thaliana GN=At2g17670 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.301e-11
Identity = 44/172 (25.58%), Postives = 85/172 (49.42%), Query Frame = 1
Query:   25 DMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQ---VHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISN----PDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQ 519
            D+VS+T L+          EA+ + S++    F P+ F  ++++    G C L  G +   V+    + G++ D+   + L+   +K G + EA M  + + +    PDT ++T++++G  + G S  AL L   ME  G  PN  T+  +L       L+++G+  ++ M+
Sbjct:  229 DLVSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIM---KGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMK 397          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PPR9_ARATH (Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 45/176 (25.57%), Postives = 86/176 (48.86%), Query Frame = 1
Query:   19 ERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCF---LDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISN----PDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEK 525
            E D +++ T++ A    S++   +A++ +M E+         S V+    GLC    L+ G  V     + G   +  I + L+D YAK G++ +A+ +  R+ +    PD V+++ +++G  ++G  E AL  F      G+  NS+ +  ++      G V+E    F++M EK
Sbjct:  289 EADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVI---GGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEK 461          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PPR96_ARATH (Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 48/182 (26.37%), Postives = 92/182 (50.55%), Query Frame = 1
Query:   19 ERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGR-----QVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFE----RISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEKFGLV 537
            E D+V +TT++ A        +AL +F++M  +   PN  T +S++      C  ++GR     ++ S   +  ++ +    SAL+D + K G + EA  +++    R  +PD  +++++I+G+  H   + A  +F  M      PN VT+  ++        VEEG+  F++M ++ GLV
Sbjct:  252 EADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI-----RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQR-GLV 427          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP247_ARATH (Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 44/188 (23.40%), Postives = 89/188 (47.34%), Query Frame = 1
Query:   25 DMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISN----PDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEK-----FGLVPVMEHYAC 561
            D+V+++ L+    +  +  EA  ++++M     +P+  T +S++        L    Q+  L    G + D    S L++ Y K   + + + +F  IS+    P+T+++  ++ G+ Q G    A +LF+ M   GV P+ VT+  +L      G + + L  F++MQ+       G+  ++ H  C
Sbjct:  314 DVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMC 501          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP432_ARATH (Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 36/166 (21.69%), Postives = 84/166 (50.60%), Query Frame = 1
Query:   31 VSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERIS----NPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQM 516
            V++  L+  H     ++EAL +F  M  +  +P++ +   +L         D  R  +    + G+   +   + ++D   K G + EAV++   +S    +PD V+++A+I+G+ + G  + A ++  R+ ++G+ PN + +  +++ C   G ++E +  ++ M
Sbjct:  334 VTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAM 499          
The following BLAST results are available for this feature:
BLAST of CF504011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
PPR49_ARATH1.026e-1226.04Pentatricopeptide repeat-containing protein At1g18... [more]
PP183_ARATH1.026e-1226.59Pentatricopeptide repeat-containing protein At2g34... [more]
PPR12_ARATH3.899e-1228.97Pentatricopeptide repeat-containing protein At1g05... [more]
PP362_ARATH5.092e-1225.00Pentatricopeptide repeat-containing protein At5g02... [more]
PPR94_ARATH1.482e-1128.02Pentatricopeptide repeat-containing protein At1g62... [more]
PP161_ARATH3.301e-1125.58Pentatricopeptide repeat-containing protein At2g17... [more]
PPR9_ARATH4.311e-1125.57Pentatricopeptide repeat-containing protein At1g03... [more]
PPR96_ARATH4.311e-1126.37Pentatricopeptide repeat-containing protein At1g62... [more]
PP247_ARATH4.311e-1123.40Pentatricopeptide repeat-containing protein At3g22... [more]
PP432_ARATH7.353e-1121.69Pentatricopeptide repeat-containing protein At5g55... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-499 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504011 ID=CF504011; Name=CF504011; organism=Citrus sinensis; type=EST; length=568bp
GTTTTTGACAGGATGGGGGAGAGAGATATGGTGTCTTGGACAACTCTTGT
GACTGCTCACTCTCAATGTTCTGAATGGGAGGAAGCACTTGCGATTTTTT
CCCAAATGAGGGAGGAAGAATTTAGTCCTAACCAGTTCACAATTTCCAGT
GTTCTTGTATCTTGTGCTGGCCTTTGTTTTCTAGATTTTGGTCGGCAAGT
TCATAGTCTTTGTTTCAAGACTGGGTTGGACACTGACAAGCGCATAGAAA
GTGCTTTGTTGGACATGTATGCCAAATGTGGCAATATAAGTGAGGCAGTG
ATGATATTTGAAAGGATTTCCAACCCTGATACTGTTTCATGGACAGCTAT
AATATCGGGTTATGCCCAGCACGGTCTCTCGGAAAATGCCCTTCAACTCT
TTAGAAGAATGGAACAGTTGGGTGTGAAGCCTAACTCTGTTACCTTTCTC
TGTGTTCTGTTTGCTTGCAGCCATGGAGGACTGGTAGAGGAAGGCCTGCA
CCATTTTCAACAAATGCAGGAAAAATTTGGTCTGGTGCCAGTGATGGAAC
ATTATGCTTGTATTGGTG
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