CF504011

Overview
NameCF504011
Unique NameCF504011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP295_ARATH (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.281e-35
Identity = 75/195 (38.46%), Postives = 122/195 (62.56%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMR-----EEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERI-SNPDTVSWTAIISGYAQHGLSENALQLFRRMEQL-GVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEKFGLVPVMEHYACI 564
            +FD M ER+++SW+ L+  +  C +++EAL +F +M+     E    PN+FT+S+VL +C  L  L+ G+ VH+   K  ++ D  + +AL+DMYAKCG++  A  +F  + S  D  +++A+I   A +GL++   QLF  M     + PNSVTF+ +L AC H GL+ EG  +F+ M E+FG+ P ++HY C+
Sbjct:  150 LFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCM 344          

HSP 2 Score: 76.6406 bits (187), Expect = 9.281e-14
Identity = 44/164 (26.83%), Postives = 86/164 (52.44%), Query Frame = 1
Query:   37 WTTLVTA--HSQCSEWEEA-LAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQ 519
            W  ++ A  H+  S    + ++++ +MR    SP+  T   +L S      L  G++ H+     GLD D  + ++LL+MY+ CG++  A  +F+   + D  +W ++++ YA+ GL ++A +LF  M +     N +++ C++      G  +E L  F++MQ
Sbjct:   27 WNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPE----RNVISWSCLINGYVMCGKYKEALDLFREMQ 186          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP245_ARATH (Pentatricopeptide repeat-containing protein At3g21470 OS=Arabidopsis thaliana GN=PCMP-E29 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.281e-35
Identity = 73/188 (38.83%), Postives = 117/188 (62.23%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEKFGLVPVMEHYACI 564
            +F R+  RD+V W TL+  ++Q    ++A+  F  M+ E + P+  T+SS+L +CA    LD GR+VHSL    G++ ++ + +AL+DMYAKCG++  A  +FE IS        ++IS  A HG  + AL++F  ME L +KP+ +TF+ VL AC HGG + EGL  F +M+ +  + P ++H+ C+
Sbjct:  230 IFYRVFARDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQSGRLDVGREVHSLINHRGIELNQFVSNALIDMYAKCGDLENATSVFESISVRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLKPDEITFIAVLTACVHGGFLMEGLKIFSEMKTQ-DVKPNVKHFGCL 416          

HSP 2 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 43/160 (26.88%), Postives = 80/160 (50.00%), Query Frame = 1
Query:   22 RDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSL--CFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEG 495
            R+ V+W  ++  + +  E E+A  +F +M         F + +V      L      R++      F+   + +  + S ++  Y + G++ EA  IF R+   D V W  +I+GYAQ+G S++A+  F  M+  G +P++VT   +L AC+  G ++ G
Sbjct:  142 RNTVTWIEMIKGYGKRIEIEKARELFERM--------PFELKNVKAWSVMLGVYVNNRKMEDARKFFEDIPEKNAFVWSLMMSGYFRIGDVHEARAIFYRVFARDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQSGRLDVG 293          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP127_ARATH (Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E5 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.281e-35
Identity = 68/188 (36.17%), Postives = 113/188 (60.11%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEKFGLVPVMEHYACI 564
            VF+R+  + ++SW ++    SQ     E L  F QM + +   ++ ++SSV+ +CA +  L+ G QV +     GLD+D+ + S+L+D+Y KCG +     +F+ +   D V W ++ISGYA +G    A+ LF++M   G++P  +TF+ VL AC++ GLVEEG   F+ M+   G VP  EH++C+
Sbjct:  406 VFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTMVKSDEVPWNSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGLVEEGRKLFESMKVDHGFVPDKEHFSCM 593          

HSP 2 Score: 98.9821 bits (245), Expect = 1.746e-20
Identity = 57/196 (29.08%), Postives = 101/196 (51.53%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGN-------------------------------ISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEG 495
            +FDR   R ++ W ++++ +   +   EAL +F++MR E    ++ T+++V+ +C GL FL+ G+Q+H    K GL  D  + S LLDMY+KCG+                               I +A  +FERI N   +SW ++ +G++Q+G +   L+ F +M +L +  + V+   V+ AC+    +E G
Sbjct:  275 LFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEMRNETREDSR-TLAAVINACIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASISSLELG 469          

HSP 3 Score: 85.8853 bits (211), Expect = 1.530e-16
Identity = 48/136 (35.29%), Postives = 82/136 (60.29%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRR 408
            +F+ M E+D+V+  +L+  +      EEAL +F ++    FS +  T+++VL +CA L  L  G+Q+H+     G++ D ++ S+L+++YAKCG++  A  + E+I  PD  S +A+ISGYA  G    +  LF R
Sbjct:  146 LFNAMPEKDVVTLNSLLHGYILNGYAEEALRLFKELN---FSADAITLTTVLKACAELEALKCGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCGRVNESRGLFDR 278          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP122_ARATH (Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.281e-35
Identity = 67/189 (35.45%), Postives = 113/189 (59.79%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDT-VSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEKFGLVPVMEHYACI 564
            +F  M  RD VSW+T++   +    + E+   F +++    SPN+ +++ VL +C+     +FG+ +H    K G      + +AL+DMY++CGN+  A ++FE +      VSWT++I+G A HG  E A++LF  M   GV P+ ++F+ +L ACSH GL+EEG  +F +M+  + + P +EHY C+
Sbjct:  225 IFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCM 413          

HSP 2 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 47/158 (29.75%), Postives = 74/158 (46.84%), Query Frame = 1
Query:   40 TTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEG--LHHF 507
            TTL+  +  C   E A  +F +M +    PN    ++V+ +C     +   R++    F   L  +    + +L  Y K G +  A  IF  + + D VSW+ +I G A +G    +   FR +++ G+ PN V+   VL ACS  G  E G  LH F
Sbjct:  145 TTLIGMYGGCGCVEFARKVFDEMHQ----PNLVAWNAVITACFRGNDVAGAREI----FDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGF 294          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.591e-35
Identity = 73/188 (38.83%), Postives = 109/188 (57.98%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEKFGLVPVMEHYACI 564
            +F ++  R +VSW  ++   +Q     +AL  FSQMR     P+ FT  SV+ + A L      + +H +  ++ LD +  + +AL+DMYAKCG I  A +IF+ +S     +W A+I GY  HG  + AL+LF  M++  +KPN VTFL V+ ACSH GLVE GL  F  M+E + +   M+HY  +
Sbjct:  394 MFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAM 581          

HSP 2 Score: 124.02 bits (310), Expect = 5.069e-28
Identity = 63/165 (38.18%), Postives = 97/165 (58.79%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEG 495
            VFDRM ERD+VSW T+V  +SQ      AL +   M EE   P+  TI SVL + + L  +  G+++H    ++G D+   I +AL+DMYAKCG++  A  +F+ +   + VSW ++I  Y Q+   + A+ +F++M   GVKP  V+ +  L AC+  G +E G
Sbjct:  192 VFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERG 356          

HSP 3 Score: 110.153 bits (274), Expect = 7.574e-24
Identity = 55/155 (35.48%), Postives = 92/155 (59.35%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFA 465
            +FD M ER++VSW +++ A+ Q    +EA+ IF +M +E   P   ++   L +CA L  L+ GR +H L  + GLD +  + ++L+ MY KC  +  A  +F ++ +   VSW A+I G+AQ+G   +AL  F +M    VKP++ T++ V+ A
Sbjct:  293 LFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITA 447          

HSP 4 Score: 98.5969 bits (244), Expect = 2.281e-20
Identity = 51/165 (30.91%), Postives = 94/165 (56.97%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEG 495
            VF+ +  +  V + T++   ++ S+ ++AL  F +MR ++  P  +  + +L  C     L  G+++H L  K+G   D    + L +MYAKC  ++EA  +F+R+   D VSW  I++GY+Q+G++  AL++ + M +  +KP+ +T + VL A S   L+  G
Sbjct:   91 VFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVG 255          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP184_ARATH (Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana GN=PCMP-E23 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 5.591e-35
Identity = 72/188 (38.30%), Postives = 115/188 (61.17%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEKFGLVPVMEHYACI 564
            VF++M ++D V+WT ++T +SQ  +  EA  +F +M +   SP+  T+S+VL +C  +  L+ G+Q+ +   +  L  +  + + L+DMY KCG + EA+ +FE +   +  +W A+I+ YA  G ++ AL LF RM    V P+ +TF+ VL AC H GLV +G  +F +M   FGLVP +EHY  I
Sbjct:  290 VFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNI 474          

HSP 2 Score: 121.709 bits (304), Expect = 2.516e-27
Identity = 62/156 (39.74%), Postives = 99/156 (63.46%), Query Frame = 1
Query:   70 SEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEG-LHHFQQMQEKFGL 534
            ++ E AL+++ +M+     P++FT + V ++CA L  +  GR VHS  FK GL+ D  I  +L+ MYAKCG +  A  +F+ I+  DTVSW ++ISGY++ G +++A+ LFR+ME+ G +P+  T + +L ACSH G +  G L     + +K GL
Sbjct:  111 NDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGL 266          

HSP 3 Score: 118.242 bits (295), Expect = 2.781e-26
Identity = 59/165 (35.76%), Postives = 98/165 (59.39%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEG 495
            +FD + ERD VSW ++++ +S+    ++A+ +F +M EE F P++ T+ S+L +C+ L  L  GR +  +     +     + S L+ MY KCG++  A  +F ++   D V+WTA+I+ Y+Q+G S  A +LF  ME+ GV P++ T   VL AC   G +E G
Sbjct:  189 LFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELG 353          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP203_ARATH (Pentatricopeptide repeat-containing protein At2g46050, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E39 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.303e-35
Identity = 75/187 (40.11%), Postives = 114/187 (60.96%), Query Frame = 1
Query:    4 FDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEKFGLVPVMEHYACI 564
            F+ M  R++VSW  ++   +Q  E  EA+ +F QM  E   P++ T +SVL SCA    +   +QV ++  K G      + ++L+  Y++ GN+SEA++ F  I  PD VSWT++I   A HG +E +LQ+F  M Q  ++P+ +TFL VL ACSHGGLV+EGL  F++M E + +    EHY C+
Sbjct:  299 FESMVVRNVVSWNAMIVGFAQNGEGREAMRLFGQMLLENLQPDELTFASVLSSCAKFSAIWEIKQVQAMVTKKGSADFLSVANSLISSYSRNGNLSEALLCFHSIREPDLVSWTSVIGALASHGFAEESLQMFESMLQ-KLQPDKITFLEVLSACSHGGLVQEGLRCFKRMTEFYKIEAEDEHYTCL 484          

HSP 2 Score: 98.2117 bits (243), Expect = 2.979e-20
Identity = 59/179 (32.96%), Postives = 101/179 (56.42%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEE--FSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEKFG 531
            VF+ + +RD+V W  LV+++      +EA  +   M  ++  F  + FT SS+L +C     ++ G+Q+H++ FK     D  + +ALL+MYAK  ++S+A   FE +   + VSW A+I G+AQ+G    A++LF +M    ++P+ +TF  VL +C+    + E +   Q M  K G
Sbjct:  199 VFEAVLDRDLVLWNALVSSYVLNGMIDEAFGLLKLMGSDKNRFRGDYFTFSSLLSACR----IEQGKQIHAILFKVSYQFDIPVATALLNMYAKSNHLSDARECFESMVVRNVVSWNAMIVGFAQNGEGREAMRLFGQMLLENLQPDELTFASVLSSCAKFSAIWE-IKQVQAMVTKKG 372          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP260_ARATH (Pentatricopeptide repeat-containing protein At3g28660 OS=Arabidopsis thaliana GN=PCMP-E80 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 9.537e-35
Identity = 71/190 (37.37%), Postives = 116/190 (61.05%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTG-LDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRME-QLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEKFGLVPVMEHYACI 564
            VFD + + D+V W  L+  + +C    E L +F +M      P++F++++ L +CA +  L  G+ +H    K   +++D  + +AL+DMYAKCG I  AV +FE+++  +  SW A+I GYA +G ++ A     R+E + G+KP+SV  L VL AC+HGG +EEG    + M+ ++G+ P  EHY+CI
Sbjct:  174 VFDEIPQPDVVKWDVLMNGYVRCGLGSEGLEVFKEMLVRGIEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKRWIESDVFVGTALVDMYAKCGCIETAVEVFEKLTRRNVFSWAALIGGYAAYGYAKKATTCLDRIEREDGIKPDSVVLLGVLAACAHGGFLEEGRTMLENMEARYGITPKHEHYSCI 363          

HSP 2 Score: 87.0409 bits (214), Expect = 6.867e-17
Identity = 47/175 (26.86%), Postives = 90/175 (51.43%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQM---REEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLD-TDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEG--LHHF 507
            +FD +   +   + T++   S+ S+    L  F  M    EE+ +P+  T   ++V+C   CF   G+Q+H    K G+  +D  +++ +L +Y +   + +A  +F+ I  PD V W  +++GY + GL    L++F+ M   G++P+  +    L AC+  G + +G  +H F
Sbjct:   69 IFDSIEIPNSFVYDTMIRICSRSSQPHLGLRYFLLMVKEEEEDITPSYLTFHFLIVACLKACFFSVGKQIHCWVVKNGVFLSDGHVQTGVLRIYVEDKLLFDARKVFDEIPQPDVVKWDVLMNGYVRCGLGSEGLEVFKEMLVRGIEPDEFSVTTALTACAQVGALAQGKWIHEF 243          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP231_ARATH (Pentatricopeptide repeat-containing protein At3g14730 OS=Arabidopsis thaliana GN=PCMP-E31 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.246e-34
Identity = 67/192 (34.90%), Postives = 115/192 (59.90%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGL----DTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEKFGLVPVMEHYACI 564
            +F+ M ERD+ +W +++  H  C + +  LA+F +M      P+  T+++VL +C  L  L  GR++H     +GL     +++ I ++L+DMY KCG++ +A M+F+ +   D+ SW  +I+GY      E AL +F  M + GVKP+ +TF+ +L ACSH G + EG +   QM+  + ++P  +HYAC+
Sbjct:  319 IFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFERMLCSGIRPDIVTLTTVLPTCGRLASLRQGREIHGYMIVSGLLNRKSSNEFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVGLLQACSHSGFLNEGRNFLAQMETVYNILPTSDHYACV 510          

HSP 2 Score: 106.301 bits (264), Expect = 1.094e-22
Identity = 61/166 (36.75%), Postives = 91/166 (54.82%), Query Frame = 1
Query:    1 VFDRMGERD-MVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEG 495
            VFD + +RD  V W  LV  +SQ   +E+AL +FS+MREE    ++ TI+SVL +      +D GR +H L  KTG  +D  + +AL+DMY K   + EA  IFE +   D  +W +++  +   G  +  L LF RM   G++P+ VT   VL  C     + +G
Sbjct:  217 VFDELPDRDDSVLWNALVNGYSQIFRFEDALLVFSKMREEGVGVSRHTITSVLSAFTVSGDIDNGRSIHGLAVKTGSGSDIVVSNALIDMYGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFERMLCSGIRPDIVTLTTVLPTCGRLASLRQG 382          

HSP 3 Score: 77.411 bits (189), Expect = 5.441e-14
Identity = 46/160 (28.75%), Postives = 84/160 (52.50%), Query Frame = 1
Query:   19 ERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERI-SNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEG 495
            ERD+  +  L++         +A+  + +MR     P+++T  S+L     +   D  ++VH L FK G D+D  + S L+  Y+K  ++ +A  +F+ +    D+V W A+++GY+Q    E+AL +F +M + GV  +  T   VL A +  G ++ G
Sbjct:  123 ERDVFGYNALISGFVVNGSPLDAMETYREMRANGILPDKYTFPSLLKGSDAMELSDV-KKVHGLAFKLGFDSDCYVGSGLVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSQIFRFEDALLVFSKMREEGVGVSRHTITSVLSAFTVSGDIDNG 281          
BLAST of CF504011 vs. ExPASy Swiss-Prot
Match: PP329_ARATH (Pentatricopeptide repeat-containing protein At4g20770 OS=Arabidopsis thaliana GN=PCMP-E35 PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.627e-34
Identity = 73/187 (39.04%), Postives = 107/187 (57.22%), Query Frame = 1
Query:    7 DRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEE-FSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQEKFGLVPVMEHYACI 564
            D + E D+  W ++++         +AL +F +M +     PN+ + ++VL SC+ LC L  GRQ H L  K+G  +D  +E+AL DMY KCG I  A   F+ +   +TV W  +I GY  +G  + A+ L+R+M   G KP+ +TF+ VL ACSH GLVE GL     MQ   G+ P ++HY CI
Sbjct:  476 DCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSHSGLVETGLEILSSMQRIHGIEPELDHYICI 662          

HSP 2 Score: 111.694 bits (278), Expect = 2.603e-24
Identity = 62/154 (40.26%), Postives = 97/154 (62.99%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISE-AVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVL 459
            VFD M ERD+VSW  +++   +    E+AL ++ +M  + F P++FT++SVL +C+ +    FG + H +  KTGLD +  + +ALL MYAKCG I +  V +FE +S P+ VS+TA+I G A+      A+Q+FR M + GV+ +SV    +L
Sbjct:   94 VFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSKVLDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNIL 247          

HSP 3 Score: 102.064 bits (253), Expect = 2.063e-21
Identity = 53/159 (33.33%), Postives = 92/159 (57.86%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLVSCAGLCFLDFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFER-ISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVK-PNSVTFLCVLFACS 471
            +F  + +  + +W  +++ +S    +EEA++ F QM+ +   P++ T+S +L SCA L FL+ G+Q+H +  +T +  +  I S L+ +Y++C  +  +  IF+  I+  D   W ++ISG+  + L   AL LFRRM Q  V  PN  +F  VL +CS
Sbjct:  372 IFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCS 530          

HSP 4 Score: 85.5001 bits (210), Expect = 1.998e-16
Identity = 51/183 (27.87%), Postives = 95/183 (51.91%), Query Frame = 1
Query:    1 VFDRMGERDMVSWTTLVTAHSQCSEWEEALAIFSQMREEEFSPNQFTISSVLV------SCAGLCFL---DFGRQVHSLCFKTGLDTDKRIESALLDMYAKCGNISEAVMIFERISNPDTVSWTAIISGYAQHGLSENALQLFRRMEQLGVKPNSVTFLCVLFACSHGGLVEEGLHHFQQMQE 522
            VF+ + + + VS+T ++   ++ ++  EA+ +F  M E+    +   +S++L        C  L  +   + G+Q+H L  + G   D  + ++LL++YAK  +++ A +IF  +   + VSW  +I G+ Q   S+ +++   RM   G +PN VT + VL AC   G VE G   F  + +
Sbjct:  196 VFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRIFSSIPQ 378          
The following BLAST results are available for this feature:
BLAST of CF504011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
PP295_ARATH4.281e-3538.46Pentatricopeptide repeat-containing protein At3g62... [more]
PP245_ARATH4.281e-3538.83Pentatricopeptide repeat-containing protein At3g21... [more]
PP127_ARATH4.281e-3536.17Putative pentatricopeptide repeat-containing prote... [more]
PP122_ARATH4.281e-3535.45Pentatricopeptide repeat-containing protein At1g74... [more]
PPR32_ARATH5.591e-3538.83Pentatricopeptide repeat-containing protein At1g11... [more]
PP184_ARATH5.591e-3538.30Pentatricopeptide repeat-containing protein At2g34... [more]
PP203_ARATH7.303e-3540.11Pentatricopeptide repeat-containing protein At2g46... [more]
PP260_ARATH9.537e-3537.37Pentatricopeptide repeat-containing protein At3g28... [more]
PP231_ARATH1.246e-3434.90Pentatricopeptide repeat-containing protein At3g14... [more]
PP329_ARATH1.627e-3439.04Pentatricopeptide repeat-containing protein At4g20... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-499 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504011 ID=CF504011; Name=CF504011; organism=Citrus sinensis; type=EST; length=568bp
GTTTTTGACAGGATGGGGGAGAGAGATATGGTGTCTTGGACAACTCTTGT
GACTGCTCACTCTCAATGTTCTGAATGGGAGGAAGCACTTGCGATTTTTT
CCCAAATGAGGGAGGAAGAATTTAGTCCTAACCAGTTCACAATTTCCAGT
GTTCTTGTATCTTGTGCTGGCCTTTGTTTTCTAGATTTTGGTCGGCAAGT
TCATAGTCTTTGTTTCAAGACTGGGTTGGACACTGACAAGCGCATAGAAA
GTGCTTTGTTGGACATGTATGCCAAATGTGGCAATATAAGTGAGGCAGTG
ATGATATTTGAAAGGATTTCCAACCCTGATACTGTTTCATGGACAGCTAT
AATATCGGGTTATGCCCAGCACGGTCTCTCGGAAAATGCCCTTCAACTCT
TTAGAAGAATGGAACAGTTGGGTGTGAAGCCTAACTCTGTTACCTTTCTC
TGTGTTCTGTTTGCTTGCAGCCATGGAGGACTGGTAGAGGAAGGCCTGCA
CCATTTTCAACAAATGCAGGAAAAATTTGGTCTGGTGCCAGTGATGGAAC
ATTATGCTTGTATTGGTG
back to top