CF504193

Overview
NameCF504193
Unique NameCF504193
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B2_CAEEL (Histone H2B 2 OS=Caenorhabditis elegans GN=his-4 PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 1.160e-35
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 1 
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y +YI++VLKQVHPD G+SSK M IMNSF+ND+FE++A EASRLA YNK+ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYSVYIYRVLKQVHPDTGVSSKAMSIMNSFVNDVFERIAAEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B1_CAEEL (Histone H2B 1 OS=Caenorhabditis elegans GN=his-11 PE=1 SV=4)

HSP 1 Score: 149.058 bits (375), Expect = 1.160e-35
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 1 
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y +YI++VLKQVHPD G+SSK M IMNSF+ND+FE++A EASRLA YNK+ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   32 ESYSVYIYRVLKQVHPDTGVSSKAMSIMNSFVNDVFERIAAEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSS 121
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B_HOLTU (Histone H2B OS=Holothuria tubulosa PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.514e-35
Identity = 71/90 (78.89%), Postives = 83/90 (92.22%), Query Frame = 1 
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y IYI+KV+KQVHPD GISS+ M IMNSF+NDIFE++A EASRLA YN+K TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   33 ESYSIYIYKVMKQVHPDTGISSRAMSIMNSFVNDIFERIAAEASRLAHYNRKSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 122
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2BL1_PSAMI (Late histone H2B.2.1 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.514e-35
Identity = 72/90 (80.00%), Postives = 83/90 (92.22%), Query Frame = 1 
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y IYI+KVLKQVHPD GISSK M IMNSF+ND+FE++A EASRLA YNKK TI+SRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   34 ESYGIYIYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKKSTISSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 123
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2BL4_STRPU (Late histone H2B.L4 (Fragment) OS=Strongylocentrotus purpuratus PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.583e-35
Identity = 71/90 (78.89%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y IYI+KVLKQVHPD GISS+ M IMNSF+ND+FE++A EASRLA+YNKK TI+SRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   17 ESYGIYIYKVLKQVHPDTGISSRAMSIMNSFVNDVFERIAGEASRLAQYNKKSTISSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 106
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2BL2_PSAMI (Late histone H2B.2.2 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 2.583e-35
Identity = 71/90 (78.89%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y IYI+KVLKQVHPD GISSK M IMNSF+ND+FE++A EASRL++YNKK TI+SRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   34 ESYGIYIYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLSQYNKKSTISSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 123
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2BL1_STRPU (Late histone H2B.L1 OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 2.583e-35
Identity = 71/90 (78.89%), Postives = 82/90 (91.11%), Query Frame = 1 
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y IYI+KVLKQVHPD GISS+ M IMNSF+ND+FE++A EASRLA YNKK TITSRE+QT VRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   33 ESYGIYIYKVLKQVHPDTGISSRAMSIMNSFVNDVFERIAAEASRLAHYNKKSTITSREVQTVVRLLLPGELAKHAVSEGTKAVTKYTTS 122
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2BE_STRPU (Histone H2B, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 4.406e-35
Identity = 72/90 (80.00%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y IYI+KVLKQVHPD GISS+ M IMNSF+NDIFE++A E+SRLA+YNKK TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   34 ESYGIYIYKVLKQVHPDTGISSRAMVIMNSFVNDIFERIAGESSRLAQYNKKSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTTS 123
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2BS1_STRPU (Histone H2B.1, sperm OS=Strongylocentrotus purpuratus PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 5.755e-35
Identity = 69/90 (76.67%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y IYI+KVLKQVHPD GISS+GM IMNSF+ND+FE++A EASRL +YN++ T++SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   50 ESYGIYIYKVLKQVHPDTGISSRGMSIMNSFVNDVFERVAAEASRLTKYNRRSTVSSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 139
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2BE2_PSAMI (Histone H2B.2, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 5.755e-35
Identity = 72/90 (80.00%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y IYI+KVLKQVHPD GISS+ M IMNSF+NDIFE++A E+SRLA+YNKK TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   33 ESYGIYIYKVLKQVHPDTGISSRAMIIMNSFVNDIFERIAGESSRLAQYNKKSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTTS 122
The following BLAST results are available for this feature:
BLAST of CF504193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B2_CAEEL1.160e-3577.78Histone H2B 2 OS=Caenorhabditis elegans GN=his-4 P... [more]
H2B1_CAEEL1.160e-3577.78Histone H2B 1 OS=Caenorhabditis elegans GN=his-11 ... [more]
H2B_HOLTU1.514e-3578.89Histone H2B OS=Holothuria tubulosa PE=3 SV=1[more]
H2BL1_PSAMI1.514e-3580.00Late histone H2B.2.1 OS=Psammechinus miliaris PE=3... [more]
H2BL4_STRPU2.583e-3578.89Late histone H2B.L4 (Fragment) OS=Strongylocentrot... [more]
H2BL2_PSAMI2.583e-3578.89Late histone H2B.2.2 OS=Psammechinus miliaris PE=3... [more]
H2BL1_STRPU2.583e-3578.89Late histone H2B.L1 OS=Strongylocentrotus purpurat... [more]
H2BE_STRPU4.406e-3580.00Histone H2B, embryonic OS=Strongylocentrotus purpu... [more]
H2BS1_STRPU5.755e-3576.67Histone H2B.1, sperm OS=Strongylocentrotus purpura... [more]
H2BE2_PSAMI5.755e-3580.00Histone H2B.2, embryonic OS=Psammechinus miliaris ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-681 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504193 ID=CF504193; Name=CF504193; organism=Citrus sinensis; type=EST; length=515bp
TTTCGAAGTAAAAGGAAAAGAAAATATCTACAAGCCTTGCCTTTCTCTCT
CTCTACCAAACCGAAATTAATGGCACCAAAGGCGGAGAAGAAGCCGGCTG
AGAAGAAGCCAGCGGAGGAGAAGAAGACATCGGTGGCCGAGAAGGCGCCG
GCGGAGAAGAAGCCGAAGGCCGGCAAGAAGCTTCCCAAAGAAGCCGCCTC
TGGCGACAAGAAGAAGAAGCGCGCGAAGAAGAGCATCGAGACGTACAAGA
TTTACATCTTCAAAGTCCTGAAGCAGGTACATCCCGATATCGGAATCTCG
AGCAAGGGCATGGGAATCATGAACAGTTTCATCAACGATATTTTCGAGAA
GCTTGCCCAGGAAGCTTCTAGGCTTGCAAGGTACAATAAGAAGCCGACGA
TTACATCTCGGGAAATTCAGACCGCTGTGAGACTTGTACTTCCTGGTGAG
CTGGCTAAGCACGCTGTTTCTGAGGGTACCAAAGCTGTTACTAAGTTTAC
TTCTTCTTGAAGGAA
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