CF504193

Overview
NameCF504193
Unique NameCF504193
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504193_ssr44 microsatellite CF504193_ssr44:44..53. BLAST: Citrus ESTs to Prunus persica proteins V1
CF504193_ssr208 microsatellite CF504193_ssr208:208..219. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5660 contig Csv1_Contig5660:398..912. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B1_ORYSI (Histone H2B.1 OS=Oryza sativa subsp. indica GN=OsI_010709 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.849e-42
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:  232 SIETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            S+ETYKIYIFKVLKQVHPDIGISSK M IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   61 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSN 152
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B6_ORYSJ (Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H2B.6 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 6.348e-42
Identity = 86/92 (93.48%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:  232 SIETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            S+ETYKIYIFKVLKQVHPDIGISSK M IMNSFINDIFEKLA EA++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B_TOBAC (Histone H2B OS=Nicotiana tabacum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 1.414e-41
Identity = 86/103 (83.50%), Postives = 92/103 (89.32%), Query Frame = 1 
Query:  199 SGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            +GD        S+ETYKIYIF+VLK VHPDIGISSK MGIMNSFINDIFEKLA+E+SRLA YNKKPTI+SREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   44 AGDKKKKRAEMSVETYKIYIFRVLKHVHPDIGISSKAMGIMNSFINDIFEKLARESSRLAGYNKKPTISSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 146
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B5_MAIZE (Histone H2B.5 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 1.414e-41
Identity = 85/92 (92.39%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:  232 SIETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            S+ETYKIYIFKVLKQVHPDIGISSK M IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   63 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 154
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B4_MAIZE (Histone H2B.4 OS=Zea mays PE=3 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 1.414e-41
Identity = 85/92 (92.39%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:  232 SIETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            S+ETYKIYIFKVLKQVHPDIGISSK M IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   46 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 137
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B2_MAIZE (Histone H2B.2 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 1.414e-41
Identity = 85/92 (92.39%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:  232 SIETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            S+ETYKIYIFKVLKQVHPDIGISSK M IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   59 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B8_ORYSJ (Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H2B.8 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.847e-41
Identity = 85/92 (92.39%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:  232 SIETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            S+ETYKIYIFKVLKQVHPDIGISSK M IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B8_ORYSI (Histone H2B.8 OS=Oryza sativa subsp. indica GN=H2B.8 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.847e-41
Identity = 85/92 (92.39%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:  232 SIETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            S+ETYKIYIFKVLKQVHPDIGISSK M IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B6_ORYSI (Histone H2B.6 OS=Oryza sativa subsp. indica GN=H2B.6 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.847e-41
Identity = 85/92 (92.39%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:  232 SIETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            S+ETYKIYIFKVLKQVHPDIGISSK M IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B5_WHEAT (Histone H2B.5 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 1.847e-41
Identity = 85/92 (92.39%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:  232 SIETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            S+ETYKIYIFKVLKQVHPDIGISSK M IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   45 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 136
The following BLAST results are available for this feature:
BLAST of CF504193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B1_ORYSI2.849e-4293.48Histone H2B.1 OS=Oryza sativa subsp. indica GN=OsI... [more]
H2B6_ORYSJ6.348e-4293.48Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B_TOBAC1.414e-4183.50Histone H2B OS=Nicotiana tabacum GN=HIS2B PE=2 SV=... [more]
H2B5_MAIZE1.414e-4192.39Histone H2B.5 OS=Zea mays PE=2 SV=3[more]
H2B4_MAIZE1.414e-4192.39Histone H2B.4 OS=Zea mays PE=3 SV=3[more]
H2B2_MAIZE1.414e-4192.39Histone H2B.2 OS=Zea mays PE=2 SV=3[more]
H2B8_ORYSJ1.847e-4192.39Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B8_ORYSI1.847e-4192.39Histone H2B.8 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B6_ORYSI1.847e-4192.39Histone H2B.6 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B5_WHEAT1.847e-4192.39Histone H2B.5 OS=Triticum aestivum PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-681 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504193 ID=CF504193; Name=CF504193; organism=Citrus sinensis; type=EST; length=515bp
TTTCGAAGTAAAAGGAAAAGAAAATATCTACAAGCCTTGCCTTTCTCTCT
CTCTACCAAACCGAAATTAATGGCACCAAAGGCGGAGAAGAAGCCGGCTG
AGAAGAAGCCAGCGGAGGAGAAGAAGACATCGGTGGCCGAGAAGGCGCCG
GCGGAGAAGAAGCCGAAGGCCGGCAAGAAGCTTCCCAAAGAAGCCGCCTC
TGGCGACAAGAAGAAGAAGCGCGCGAAGAAGAGCATCGAGACGTACAAGA
TTTACATCTTCAAAGTCCTGAAGCAGGTACATCCCGATATCGGAATCTCG
AGCAAGGGCATGGGAATCATGAACAGTTTCATCAACGATATTTTCGAGAA
GCTTGCCCAGGAAGCTTCTAGGCTTGCAAGGTACAATAAGAAGCCGACGA
TTACATCTCGGGAAATTCAGACCGCTGTGAGACTTGTACTTCCTGGTGAG
CTGGCTAAGCACGCTGTTTCTGAGGGTACCAAAGCTGTTACTAAGTTTAC
TTCTTCTTGAAGGAA
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