CF504193

Overview
NameCF504193
Unique NameCF504193
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B4_WHEAT (Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 7.760e-40
Identity = 82/92 (89.13%), Postives = 88/92 (95.65%), Query Frame = 1
Query:  232 SIETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            S+ETYKIYIFKVLKQVHPDIGISSK M I NSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   44 SMETYKIYIFKVLKQVHPDIGISSKAMSITNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 135          
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B4_CHLRE (Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 1.729e-39
Identity = 79/91 (86.81%), Postives = 87/91 (95.60%), Query Frame = 1
Query:  232 SIETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 504
            ++ETYK+YI+KVLKQVHPD GISSK M IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   62 AVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 152          
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B3_CHLRE (Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 1.729e-39
Identity = 79/91 (86.81%), Postives = 87/91 (95.60%), Query Frame = 1
Query:  232 SIETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 504
            ++ETYK+YI+KVLKQVHPD GISSK M IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   62 AVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 152          
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B2_CHLRE (Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 1.729e-39
Identity = 79/91 (86.81%), Postives = 87/91 (95.60%), Query Frame = 1
Query:  232 SIETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 504
            ++ETYK+YI+KVLKQVHPD GISSK M IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   65 AVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 155          
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B1_CHLRE (Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B PE=1 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 1.729e-39
Identity = 79/91 (86.81%), Postives = 87/91 (95.60%), Query Frame = 1
Query:  232 SIETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 504
            ++ETYK+YI+KVLKQVHPD GISSK M IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   62 AVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 152          
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B4_VOLCA (Histone H2B.4 OS=Volvox carteri PE=3 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 3.851e-39
Identity = 79/90 (87.78%), Postives = 86/90 (95.56%), Query Frame = 1
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            ETYK+YI+KVLKQVHPD GISSK M IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   66 ETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSA 155          
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B3_VOLCA (Histone H2B.3 OS=Volvox carteri PE=3 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 3.851e-39
Identity = 79/90 (87.78%), Postives = 86/90 (95.56%), Query Frame = 1
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            ETYK+YI+KVLKQVHPD GISSK M IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   68 ETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSA 157          
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B_PEA (Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 3.605e-37
Identity = 79/88 (89.77%), Postives = 81/88 (92.05%), Query Frame = 1
Query:  241 TYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 504
            T KIYIFKVLKQVHPDIGISSK MGIMNSFINDIFEKLA EASRLARYNKK TIT REIQTAVRL+LPGE+AKH VSE TKAVTKFTS
Sbjct:   31 TVKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASEASRLARYNKKSTITPREIQTAVRLLLPGEVAKHKVSEATKAVTKFTS 118          
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B3B_MOUSE (Histone H2B type 3-B OS=Mus musculus GN=Hist3h2bb PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 3.605e-37
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 1
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y IY++KVLKQVHPD GISSK MGIMNSF+NDIFE++A EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B3B_HUMAN (Histone H2B type 3-B OS=Homo sapiens GN=HIST3H2BB PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 3.605e-37
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 1
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y IY++KVLKQVHPD GISSK MGIMNSF+NDIFE++A EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
The following BLAST results are available for this feature:
BLAST of CF504193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B4_WHEAT7.760e-4089.13Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 S... [more]
H2B4_CHLRE1.729e-3986.81Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B3_CHLRE1.729e-3986.81Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B2_CHLRE1.729e-3986.81Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B1_CHLRE1.729e-3986.81Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B ... [more]
H2B4_VOLCA3.851e-3987.78Histone H2B.4 OS=Volvox carteri PE=3 SV=3[more]
H2B3_VOLCA3.851e-3987.78Histone H2B.3 OS=Volvox carteri PE=3 SV=3[more]
H2B_PEA3.605e-3789.77Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B ... [more]
H2B3B_MOUSE3.605e-3782.22Histone H2B type 3-B OS=Mus musculus GN=Hist3h2bb ... [more]
H2B3B_HUMAN3.605e-3782.22Histone H2B type 3-B OS=Homo sapiens GN=HIST3H2BB ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-681 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504193 ID=CF504193; Name=CF504193; organism=Citrus sinensis; type=EST; length=515bp
TTTCGAAGTAAAAGGAAAAGAAAATATCTACAAGCCTTGCCTTTCTCTCT
CTCTACCAAACCGAAATTAATGGCACCAAAGGCGGAGAAGAAGCCGGCTG
AGAAGAAGCCAGCGGAGGAGAAGAAGACATCGGTGGCCGAGAAGGCGCCG
GCGGAGAAGAAGCCGAAGGCCGGCAAGAAGCTTCCCAAAGAAGCCGCCTC
TGGCGACAAGAAGAAGAAGCGCGCGAAGAAGAGCATCGAGACGTACAAGA
TTTACATCTTCAAAGTCCTGAAGCAGGTACATCCCGATATCGGAATCTCG
AGCAAGGGCATGGGAATCATGAACAGTTTCATCAACGATATTTTCGAGAA
GCTTGCCCAGGAAGCTTCTAGGCTTGCAAGGTACAATAAGAAGCCGACGA
TTACATCTCGGGAAATTCAGACCGCTGTGAGACTTGTACTTCCTGGTGAG
CTGGCTAAGCACGCTGTTTCTGAGGGTACCAAAGCTGTTACTAAGTTTAC
TTCTTCTTGAAGGAA
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