CF504193

Overview
NameCF504193
Unique NameCF504193
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B3A_MOUSE (Histone H2B type 3-A OS=Mus musculus GN=Hist3h2ba PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 3.605e-37
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y IY++KVLKQVHPD GISSK MGIMNSF+NDIFE++A EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B1P_MOUSE (Histone H2B type 1-P OS=Mus musculus GN=Hist1h2bp PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 3.605e-37
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y +Y++KVLKQVHPD GISSK MGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B1L_HUMAN (Histone H2B type 1-L OS=Homo sapiens GN=HIST1H2BL PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 3.605e-37
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y +Y++KVLKQVHPD GISSK MGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B1F_MOUSE (Histone H2B type 1-F/J/L OS=Mus musculus GN=Hist1h2bf PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 3.605e-37
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y +Y++KVLKQVHPD GISSK MGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B1B_MOUSE (Histone H2B type 1-B OS=Mus musculus GN=Hist1h2bb PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 3.605e-37
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y +Y++KVLKQVHPD GISSK MGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B8_CHICK (Histone H2B 8 OS=Gallus gallus GN=H2B-VIII PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 4.708e-37
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y IY++KVLKQVHPD GISSK MGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B5_CHICK (Histone H2B 5 OS=Gallus gallus GN=H2B-V PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 4.708e-37
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y IY++KVLKQVHPD GISSK MGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B2E_PONAB (Histone H2B type 2-E OS=Pongo abelii GN=HIST2H2BE PE=2 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 4.708e-37
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y IY++KVLKQVHPD GISSK MGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B2E_HUMAN (Histone H2B type 2-E OS=Homo sapiens GN=HIST2H2BE PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 4.708e-37
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y IY++KVLKQVHPD GISSK MGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B1_CHICK (Histone H2B 1/2/3/4/6 OS=Gallus gallus GN=H2B-I PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 4.708e-37
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y IY++KVLKQVHPD GISSK MGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
The following BLAST results are available for this feature:
BLAST of CF504193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B3A_MOUSE3.605e-3782.22Histone H2B type 3-A OS=Mus musculus GN=Hist3h2ba ... [more]
H2B1P_MOUSE3.605e-3782.22Histone H2B type 1-P OS=Mus musculus GN=Hist1h2bp ... [more]
H2B1L_HUMAN3.605e-3782.22Histone H2B type 1-L OS=Homo sapiens GN=HIST1H2BL ... [more]
H2B1F_MOUSE3.605e-3782.22Histone H2B type 1-F/J/L OS=Mus musculus GN=Hist1h... [more]
H2B1B_MOUSE3.605e-3782.22Histone H2B type 1-B OS=Mus musculus GN=Hist1h2bb ... [more]
H2B8_CHICK4.708e-3783.33Histone H2B 8 OS=Gallus gallus GN=H2B-VIII PE=1 SV... [more]
H2B5_CHICK4.708e-3783.33Histone H2B 5 OS=Gallus gallus GN=H2B-V PE=1 SV=2[more]
H2B2E_PONAB4.708e-3783.33Histone H2B type 2-E OS=Pongo abelii GN=HIST2H2BE ... [more]
H2B2E_HUMAN4.708e-3783.33Histone H2B type 2-E OS=Homo sapiens GN=HIST2H2BE ... [more]
H2B1_CHICK4.708e-3783.33Histone H2B 1/2/3/4/6 OS=Gallus gallus GN=H2B-I PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-681 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504193 ID=CF504193; Name=CF504193; organism=Citrus sinensis; type=EST; length=515bp
TTTCGAAGTAAAAGGAAAAGAAAATATCTACAAGCCTTGCCTTTCTCTCT
CTCTACCAAACCGAAATTAATGGCACCAAAGGCGGAGAAGAAGCCGGCTG
AGAAGAAGCCAGCGGAGGAGAAGAAGACATCGGTGGCCGAGAAGGCGCCG
GCGGAGAAGAAGCCGAAGGCCGGCAAGAAGCTTCCCAAAGAAGCCGCCTC
TGGCGACAAGAAGAAGAAGCGCGCGAAGAAGAGCATCGAGACGTACAAGA
TTTACATCTTCAAAGTCCTGAAGCAGGTACATCCCGATATCGGAATCTCG
AGCAAGGGCATGGGAATCATGAACAGTTTCATCAACGATATTTTCGAGAA
GCTTGCCCAGGAAGCTTCTAGGCTTGCAAGGTACAATAAGAAGCCGACGA
TTACATCTCGGGAAATTCAGACCGCTGTGAGACTTGTACTTCCTGGTGAG
CTGGCTAAGCACGCTGTTTCTGAGGGTACCAAAGCTGTTACTAAGTTTAC
TTCTTCTTGAAGGAA
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