CF504193

Overview
NameCF504193
Unique NameCF504193
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504193_ssr44 microsatellite CF504193_ssr44:44..53. BLAST: Citrus ESTs to Prunus persica proteins V1
CF504193_ssr208 microsatellite CF504193_ssr208:208..219. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5660 contig Csv1_Contig5660:398..912. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B1M_HUMAN (Histone H2B type 1-M OS=Homo sapiens GN=HIST1H2BM PE=1 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 6.148e-37
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 1
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y +Y++KVLKQVHPD GISSK MGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B1H_MOUSE (Histone H2B type 1-H OS=Mus musculus GN=Hist1h2bh PE=1 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 6.148e-37
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 1
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y +Y++KVLKQVHPD GISSK MGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B1H_HUMAN (Histone H2B type 1-H OS=Homo sapiens GN=HIST1H2BH PE=1 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 6.148e-37
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 1
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y +Y++KVLKQVHPD GISSK MGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B1D_HUMAN (Histone H2B type 1-D OS=Homo sapiens GN=HIST1H2BD PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 6.148e-37
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 1
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y +Y++KVLKQVHPD GISSK MGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B1C_MOUSE (Histone H2B type 1-C/E/G OS=Mus musculus GN=Hist1h2bc PE=1 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 6.148e-37
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 1
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y +Y++KVLKQVHPD GISSK MGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B1K_MOUSE (Histone H2B type 1-K OS=Mus musculus GN=Hist1h2bk PE=1 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 8.030e-37
Identity = 73/90 (81.11%), Postives = 84/90 (93.33%), Query Frame = 1
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y +Y++KVLKQVHPD GISSK MGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125          
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B_OLILU (Histone H2B OS=Olisthodiscus luteus PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.049e-36
Identity = 75/91 (82.42%), Postives = 84/91 (92.31%), Query Frame = 1
Query:  235 IETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            +ETY  YI+KVLKQVHPD GIS +GM IMNSFINDIFE+LA EASRLARYNK+ T++SREIQTAVRL+LPGELAKHAVSEGTKAVTKFTS+
Sbjct:   24 VETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114          
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B_CHITH (Histone H2B OS=Chironomus thummi thummi PE=3 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.049e-36
Identity = 75/90 (83.33%), Postives = 83/90 (92.22%), Query Frame = 1
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y IYIFKVLKQVHPD G+SSK M IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   35 ESYAIYIFKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 124          
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B1J_HUMAN (Histone H2B type 1-J OS=Homo sapiens GN=HIST1H2BJ PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.049e-36
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 1
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y IY++KVLKQVHPD GISSK MGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125          
BLAST of CF504193 vs. ExPASy Swiss-Prot
Match: H2B_SALTR (Histone H2B OS=Salmo trutta PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.370e-36
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 1
Query:  238 ETYKIYIFKVLKQVHPDIGISSKGMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 507
            E+Y IY++KVLKQVHPD GISSK MGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 ESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 123          
The following BLAST results are available for this feature:
BLAST of CF504193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B1M_HUMAN6.148e-3782.22Histone H2B type 1-M OS=Homo sapiens GN=HIST1H2BM ... [more]
H2B1H_MOUSE6.148e-3782.22Histone H2B type 1-H OS=Mus musculus GN=Hist1h2bh ... [more]
H2B1H_HUMAN6.148e-3782.22Histone H2B type 1-H OS=Homo sapiens GN=HIST1H2BH ... [more]
H2B1D_HUMAN6.148e-3782.22Histone H2B type 1-D OS=Homo sapiens GN=HIST1H2BD ... [more]
H2B1C_MOUSE6.148e-3782.22Histone H2B type 1-C/E/G OS=Mus musculus GN=Hist1h... [more]
H2B1K_MOUSE8.030e-3781.11Histone H2B type 1-K OS=Mus musculus GN=Hist1h2bk ... [more]
H2B_OLILU1.049e-3682.42Histone H2B OS=Olisthodiscus luteus PE=1 SV=2[more]
H2B_CHITH1.049e-3683.33Histone H2B OS=Chironomus thummi thummi PE=3 SV=2[more]
H2B1J_HUMAN1.049e-3682.22Histone H2B type 1-J OS=Homo sapiens GN=HIST1H2BJ ... [more]
H2B_SALTR1.370e-3682.22Histone H2B OS=Salmo trutta PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-681 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504193 ID=CF504193; Name=CF504193; organism=Citrus sinensis; type=EST; length=515bp
TTTCGAAGTAAAAGGAAAAGAAAATATCTACAAGCCTTGCCTTTCTCTCT
CTCTACCAAACCGAAATTAATGGCACCAAAGGCGGAGAAGAAGCCGGCTG
AGAAGAAGCCAGCGGAGGAGAAGAAGACATCGGTGGCCGAGAAGGCGCCG
GCGGAGAAGAAGCCGAAGGCCGGCAAGAAGCTTCCCAAAGAAGCCGCCTC
TGGCGACAAGAAGAAGAAGCGCGCGAAGAAGAGCATCGAGACGTACAAGA
TTTACATCTTCAAAGTCCTGAAGCAGGTACATCCCGATATCGGAATCTCG
AGCAAGGGCATGGGAATCATGAACAGTTTCATCAACGATATTTTCGAGAA
GCTTGCCCAGGAAGCTTCTAGGCTTGCAAGGTACAATAAGAAGCCGACGA
TTACATCTCGGGAAATTCAGACCGCTGTGAGACTTGTACTTCCTGGTGAG
CTGGCTAAGCACGCTGTTTCTGAGGGTACCAAAGCTGTTACTAAGTTTAC
TTCTTCTTGAAGGAA
back to top