CF504207

Overview
NameCF504207
Unique NameCF504207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2225 contig Csv1_Contig2225:231..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.496e-62
Identity = 91/115 (79.13%), Postives = 109/115 (94.78%), Query Frame = 1 
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            WQA+IMGP+DSPYAGGVF ++IHFP DYPFKPPK++F TK++HPNIN+NG+ICLDILK+QWSPALT+SKVLLSICSLLTD NPDDPLVPEIAH+YK+D+ KYE+TAR WT+KYA+
Sbjct:   34 WQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKYAV 148

HSP 2 Score: 46.9802 bits (110), Expect = 5.496e-62
Identity = 18/31 (58.06%), Postives = 25/31 (80.65%), Query Frame = 3 
Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            L DL++DPPTSCSAGPV +D++H  ++  GP
Sbjct:   11 LSDLERDPPTSCSAGPVGDDLYHWQASIMGP 41
[Close]
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 7.166e-62
Identity = 95/115 (82.61%), Postives = 103/115 (89.57%), Query Frame = 1 
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            WQATIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVPEIAH YK+D+ KY   AR WTQKYAM
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYAM 147

HSP 2 Score: 45.0542 bits (105), Expect = 7.166e-62
Identity = 18/31 (58.06%), Postives = 22/31 (70.97%), Query Frame = 3 
Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            L DLQ+DPP  CSAGPV +D+FH  +   GP
Sbjct:   10 LTDLQRDPPAQCSAGPVGDDLFHWQATIMGP 40
[Close]
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 7.166e-62
Identity = 92/115 (80.00%), Postives = 108/115 (93.91%), Query Frame = 1 
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            WQATIMGP DSPY+GGVF + IHFP DYPFKPPKV F T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICS+LTDPNPD+PLVPEIAH+YK+D+A+YE+TAR WT+KYA+
Sbjct:   33 WQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATAREWTRKYAI 147

HSP 2 Score: 45.4394 bits (106), Expect = 7.166e-62
Identity = 19/31 (61.29%), Postives = 23/31 (74.19%), Query Frame = 3 
Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            L DL +DPP+SCSAGPV ED+FH  +   GP
Sbjct:   10 LTDLGRDPPSSCSAGPVGEDLFHWQATIMGP 40
[Close]
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.018e-60
Identity = 94/115 (81.74%), Postives = 103/115 (89.57%), Query Frame = 1 
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            WQATIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY   AR WTQKYAM
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147

HSP 2 Score: 44.2838 bits (103), Expect = 1.018e-60
Identity = 18/31 (58.06%), Postives = 21/31 (67.74%), Query Frame = 3 
Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            L DL +DPP  CSAGPV +DMFH  +   GP
Sbjct:   10 LNDLARDPPAQCSAGPVGDDMFHWQATIMGP 40
[Close]
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.018e-60
Identity = 94/115 (81.74%), Postives = 103/115 (89.57%), Query Frame = 1 
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            WQATIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY   AR WTQKYAM
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147

HSP 2 Score: 44.2838 bits (103), Expect = 1.018e-60
Identity = 18/31 (58.06%), Postives = 21/31 (67.74%), Query Frame = 3 
Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            L DL +DPP  CSAGPV +DMFH  +   GP
Sbjct:   10 LNDLARDPPAQCSAGPVGDDMFHWQATIMGP 40
[Close]
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.018e-60
Identity = 94/115 (81.74%), Postives = 103/115 (89.57%), Query Frame = 1 
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            WQATIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY   AR WTQKYAM
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147

HSP 2 Score: 44.2838 bits (103), Expect = 1.018e-60
Identity = 18/31 (58.06%), Postives = 21/31 (67.74%), Query Frame = 3 
Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            L DL +DPP  CSAGPV +DMFH  +   GP
Sbjct:   10 LNDLARDPPAQCSAGPVGDDMFHWQATIMGP 40
[Close]
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.018e-60
Identity = 94/115 (81.74%), Postives = 103/115 (89.57%), Query Frame = 1 
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            WQATIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY   AR WTQKYAM
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147

HSP 2 Score: 44.2838 bits (103), Expect = 1.018e-60
Identity = 18/31 (58.06%), Postives = 21/31 (67.74%), Query Frame = 3 
Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            L DL +DPP  CSAGPV +DMFH  +   GP
Sbjct:   10 LNDLARDPPAQCSAGPVGDDMFHWQATIMGP 40
[Close]
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.018e-60
Identity = 94/115 (81.74%), Postives = 103/115 (89.57%), Query Frame = 1 
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            WQATIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY   AR WTQKYAM
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147

HSP 2 Score: 44.2838 bits (103), Expect = 1.018e-60
Identity = 18/31 (58.06%), Postives = 21/31 (67.74%), Query Frame = 3 
Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            L DL +DPP  CSAGPV +DMFH  +   GP
Sbjct:   10 LNDLARDPPAQCSAGPVGDDMFHWQATIMGP 40
[Close]
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.731e-60
Identity = 93/115 (80.87%), Postives = 108/115 (93.91%), Query Frame = 1 
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            WQA+IMGPSDSPYAGGVF ++IHFP DYPFKPPKV F TK++HPNINS+G+ICLDILK+QWSPALT+SKVLLSICSLLTD NPDDPLVPEIA +YK+DKAKYE+TA+ WT+KYA+
Sbjct:   34 WQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDKAKYEATAKEWTKKYAV 148

HSP 2 Score: 43.5134 bits (101), Expect = 1.731e-60
Identity = 17/31 (54.84%), Postives = 23/31 (74.19%), Query Frame = 3 
Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            L DL +DPP SCSAGPV +D++H  ++  GP
Sbjct:   11 LSDLGRDPPASCSAGPVGDDLYHWQASIMGP 41
[Close]
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 2.942e-60
Identity = 93/115 (80.87%), Postives = 103/115 (89.57%), Query Frame = 1 
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            WQATIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY   +R WTQKYAM
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147

HSP 2 Score: 44.2838 bits (103), Expect = 2.942e-60
Identity = 18/31 (58.06%), Postives = 21/31 (67.74%), Query Frame = 3 
Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            L DL +DPP  CSAGPV +DMFH  +   GP
Sbjct:   10 LSDLARDPPAQCSAGPVGDDMFHWQATIMGP 40
The following BLAST results are available for this feature:
BLAST of CF504207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
UBC4_YEAST5.496e-6279.13Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UB2D4_HUMAN7.166e-6282.61Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UBC1_COLGL7.166e-6280.00Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UB2D2_XENLA1.018e-6081.74Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT1.018e-6081.74Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE1.018e-6081.74Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN1.018e-6081.74Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN1.018e-6081.74Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
UBC5_YEAST1.731e-6080.87Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UB2D3_RAT2.942e-6080.87Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-695 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504207 ID=CF504207; Name=CF504207; organism=Citrus sinensis; type=EST; length=472bp
AACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGCCCT
GTGGCTGAAGACATGTTCCACCTGGCAAGCAACAATTATGGGCCCTTCTG
ATAGCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCCTCCT
GATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCA
CCCGAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTTAAAGAAC
AGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCTGCTCC
TTGCTTACTGATCCAAATCCCGACGACCCTCTTGTACCGGAGATTGCCCA
CATGTACAAGTCCGACAAGGCCAAATATGAATCCACGGCCAGGAGCTGGA
CACAGAAGTATGCCATGGGATGAAGGGTGTTAGGATATTGCAGAAAAAGG
AGCATTTATTGAAATATGGTGG
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