CF504207

Overview
NameCF504207
Unique NameCF504207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UB2G1_MOUSE (Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 1.119e-20
Identity = 42/112 (37.50%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDK 369
            W+  I+GP D+ Y GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL             +E+W P  T+  +++S+ S+L DPN D P   + A  ++ D+
Sbjct:   38 WEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 1.119e-20
Identity = 42/112 (37.50%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDK 369
            W+  I+GP D+ Y GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL             +E+W P  T+  +++S+ S+L DPN D P   + A  ++ D+
Sbjct:   38 WEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.255e-20
Identity = 45/125 (36.00%), Postives = 71/125 (56.80%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQK 408
            W+A IMGP D+ +  GVF   + FP DYP  PPK+ F  ++FHPNI  +G +C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     + + M++ D+ ++   A+   QK
Sbjct:   37 WEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 161          

HSP 2 Score: 21.557 bits (44), Expect = 1.255e-20
Identity = 9/21 (42.86%), Postives = 12/21 (57.14%), Query Frame = 3
Query:    6 KDLQKDPPTSCSAGPVAEDMF 68
            K L  +PP    AGP+ E+ F
Sbjct:   14 KQLTLNPPEGIVAGPMNEENF 34          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.255e-20
Identity = 45/125 (36.00%), Postives = 71/125 (56.80%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQK 408
            W+A IMGP D+ +  GVF   + FP DYP  PPK+ F  ++FHPNI  +G +C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     + + M++ D+ ++   A+   QK
Sbjct:   37 WEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 161          

HSP 2 Score: 21.557 bits (44), Expect = 1.255e-20
Identity = 9/21 (42.86%), Postives = 12/21 (57.14%), Query Frame = 3
Query:    6 KDLQKDPPTSCSAGPVAEDMF 68
            K L  +PP    AGP+ E+ F
Sbjct:   14 KQLTLNPPEGIVAGPMNEENF 34          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.255e-20
Identity = 45/125 (36.00%), Postives = 71/125 (56.80%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQK 408
            W+A IMGP D+ +  GVF   + FP DYP  PPK+ F  ++FHPNI  +G +C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     + + M++ D+ ++   A+   QK
Sbjct:   37 WEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 161          

HSP 2 Score: 21.557 bits (44), Expect = 1.255e-20
Identity = 9/21 (42.86%), Postives = 12/21 (57.14%), Query Frame = 3
Query:    6 KDLQKDPPTSCSAGPVAEDMF 68
            K L  +PP    AGP+ E+ F
Sbjct:   14 KQLTLNPPEGIVAGPMNEENF 34          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBE2S_DROAN (Ubiquitin-conjugating enzyme E2 S OS=Drosophila ananassae GN=GF21161 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.461e-20
Identity = 49/113 (43.36%), Postives = 65/113 (57.52%), Query Frame = 1
Query:   76 QATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 414
            QA I GP+ +PYA G+F V +    D+P  PPK  F TK+FHPN+ +NG IC++ LK+ W P L I  +LL+I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   47 QALIDGPAGTPYAAGIFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC6_ARATH (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.461e-20
Identity = 46/113 (40.71%), Postives = 68/113 (60.18%), Query Frame = 1
Query:   82 TIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLS-ICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 414
            T  GP+DS Y GGV+ + +  P  YP+K P V F  K++HPN++ S+G++CLD++ + WSP   +  V  S +  LL  PNP DP   E A +   D+A YE   + + +KYA
Sbjct:   35 TFHGPTDSLYQGGVWKIKVELPEAYPYKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPFNGEAASLLMRDRAAYELKVKEYCEKYA 147          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UB2SC_XENLA (Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus laevis GN=ube2s-C PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.461e-20
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   76 QATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 420
            Q  I GP  +PYA G+F + +    D+P  PPK  F TK+FHPN+++NG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +  +Y S A+  T+ +A G
Sbjct:   44 QVHIEGPEGTPYAAGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRAKLMTEIHAQG 158          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBE2S_RAT (Ubiquitin-conjugating enzyme E2 S OS=Rattus norvegicus GN=Ube2s PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.909e-20
Identity = 47/110 (42.73%), Postives = 65/110 (59.09%), Query Frame = 1
Query:   76 QATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQ 405
            Q TI GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN+  NG IC+++LK  W+  L I  VLL+I  LL  PNP+  L  E   +   +  +Y + AR  T+
Sbjct:   44 QVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 153          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBE2S_MOUSE (Ubiquitin-conjugating enzyme E2 S OS=Mus musculus GN=Ube2s PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.909e-20
Identity = 47/110 (42.73%), Postives = 65/110 (59.09%), Query Frame = 1
Query:   76 QATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQ 405
            Q TI GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN+  NG IC+++LK  W+  L I  VLL+I  LL  PNP+  L  E   +   +  +Y + AR  T+
Sbjct:   44 QVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 153          
The following BLAST results are available for this feature:
BLAST of CF504207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
UB2G1_MOUSE1.119e-2037.50Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus... [more]
UB2G1_HUMAN1.119e-2037.50Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]
UB2G2_PONAB1.255e-2036.00Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE1.255e-2036.00Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN1.255e-2036.00Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UBE2S_DROAN1.461e-2043.36Ubiquitin-conjugating enzyme E2 S OS=Drosophila an... [more]
UBC6_ARATH1.461e-2040.71Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis t... [more]
UB2SC_XENLA1.461e-2040.87Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus lae... [more]
UBE2S_RAT1.909e-2042.73Ubiquitin-conjugating enzyme E2 S OS=Rattus norveg... [more]
UBE2S_MOUSE1.909e-2042.73Ubiquitin-conjugating enzyme E2 S OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-695 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504207 ID=CF504207; Name=CF504207; organism=Citrus sinensis; type=EST; length=472bp
AACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGCCCT
GTGGCTGAAGACATGTTCCACCTGGCAAGCAACAATTATGGGCCCTTCTG
ATAGCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCCTCCT
GATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCA
CCCGAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTTAAAGAAC
AGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCTGCTCC
TTGCTTACTGATCCAAATCCCGACGACCCTCTTGTACCGGAGATTGCCCA
CATGTACAAGTCCGACAAGGCCAAATATGAATCCACGGCCAGGAGCTGGA
CACAGAAGTATGCCATGGGATGAAGGGTGTTAGGATATTGCAGAAAAAGG
AGCATTTATTGAAATATGGTGG
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