CF504207 | Citrus Genome Database

Overview


Name	CF504207
Unique Name	CF504207
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	472

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig2225	contig	Csv1_Contig2225:231..703.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 2.942e-60
Identity = 93/115 (80.87%), Postives = 103/115 (89.57%), Query Frame = 1

Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            WQATIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY   +R WTQKYAM
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147

HSP 2 Score: 44.2838 bits (103), Expect = 2.942e-60
Identity = 18/31 (58.06%), Postives = 21/31 (67.74%), Query Frame = 3

Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            L DL +DPP  CSAGPV +DMFH  +   GP
Sbjct:   10 LSDLARDPPAQCSAGPVGDDMFHWQATIMGP 40

BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 2.942e-60
Identity = 93/115 (80.87%), Postives = 103/115 (89.57%), Query Frame = 1

Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            WQATIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY   +R WTQKYAM
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147

HSP 2 Score: 44.2838 bits (103), Expect = 2.942e-60
Identity = 18/31 (58.06%), Postives = 21/31 (67.74%), Query Frame = 3

Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            L DL +DPP  CSAGPV +DMFH  +   GP
Sbjct:   10 LSDLARDPPAQCSAGPVGDDMFHWQATIMGP 40

BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 2.942e-60
Identity = 93/115 (80.87%), Postives = 103/115 (89.57%), Query Frame = 1

Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            WQATIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY   +R WTQKYAM
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147

HSP 2 Score: 44.2838 bits (103), Expect = 2.942e-60
Identity = 18/31 (58.06%), Postives = 21/31 (67.74%), Query Frame = 3

Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            L DL +DPP  CSAGPV +DMFH  +   GP
Sbjct:   10 LSDLARDPPAQCSAGPVGDDMFHWQATIMGP 40

BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 2.942e-60
Identity = 93/115 (80.87%), Postives = 103/115 (89.57%), Query Frame = 1

Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            WQATIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY   +R WTQKYAM
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147

HSP 2 Score: 44.2838 bits (103), Expect = 2.942e-60
Identity = 18/31 (58.06%), Postives = 21/31 (67.74%), Query Frame = 3

Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            L DL +DPP  CSAGPV +DMFH  +   GP
Sbjct:   10 LSDLARDPPAQCSAGPVGDDMFHWQATIMGP 40

BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 2.942e-60
Identity = 93/115 (80.87%), Postives = 103/115 (89.57%), Query Frame = 1

Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            WQATIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY   +R WTQKYAM
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147

HSP 2 Score: 44.2838 bits (103), Expect = 2.942e-60
Identity = 18/31 (58.06%), Postives = 21/31 (67.74%), Query Frame = 3

Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            L DL +DPP  CSAGPV +DMFH  +   GP
Sbjct:   10 LNDLARDPPAQCSAGPVGDDMFHWQATIMGP 40

BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 5.002e-60
Identity = 92/115 (80.00%), Postives = 101/115 (87.83%), Query Frame = 1

Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            WQATIMGP DS Y GGVF +T+HFP DYPFKPPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IA +YKSDK KY   AR WTQKYAM
Sbjct:   33 WQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 147

HSP 2 Score: 45.0542 bits (105), Expect = 5.002e-60
Identity = 18/31 (58.06%), Postives = 22/31 (70.97%), Query Frame = 3

Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            L DLQ+DPP  CSAGPV +D+FH  +   GP
Sbjct:   10 LSDLQRDPPAHCSAGPVGDDLFHWQATIMGP 40

BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 5.002e-60
Identity = 92/115 (80.00%), Postives = 101/115 (87.83%), Query Frame = 1

Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            WQATIMGP DS Y GGVF +T+HFP DYPFKPPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IA +YKSDK KY   AR WTQKYAM
Sbjct:   33 WQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 147

HSP 2 Score: 45.0542 bits (105), Expect = 5.002e-60
Identity = 18/31 (58.06%), Postives = 22/31 (70.97%), Query Frame = 3

Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            L DLQ+DPP  CSAGPV +D+FH  +   GP
Sbjct:   10 LSDLQRDPPAHCSAGPVGDDLFHWQATIMGP 40

BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 5.002e-60
Identity = 92/115 (80.00%), Postives = 101/115 (87.83%), Query Frame = 1

Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            WQATIMGP DS Y GGVF +T+HFP DYPFKPPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IA +YKSDK KY   AR WTQKYAM
Sbjct:   33 WQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 147

HSP 2 Score: 45.0542 bits (105), Expect = 5.002e-60
Identity = 18/31 (58.06%), Postives = 22/31 (70.97%), Query Frame = 3

Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            L DLQ+DPP  CSAGPV +D+FH  +   GP
Sbjct:   10 LSDLQRDPPAHCSAGPVGDDLFHWQATIMGP 40

BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 6.521e-60
Identity = 91/115 (79.13%), Postives = 105/115 (91.30%), Query Frame = 1

Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            WQA+IMGP DSPYAGGVF ++IHFP DYP KPPK+A  TK++HPNINSNG+ICLDILK+QWSPALTISKVLLSICSLLTD NPDDPLVPEIAH+YK D+ KYE+TA+ WT+KYA+
Sbjct:   33 WQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYEATAKEWTKKYAV 147

HSP 2 Score: 43.8986 bits (102), Expect = 6.521e-60
Identity = 17/31 (54.84%), Postives = 24/31 (77.42%), Query Frame = 3

Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            L DL +DPP+SCSAGPV +D++H  ++  GP
Sbjct:   10 LSDLGRDPPSSCSAGPVGDDLYHWQASIMGP 40

BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.503e-60
Identity = 93/115 (80.87%), Postives = 102/115 (88.70%), Query Frame = 1

Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            WQATIMGP DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY   AR WT+KYAM
Sbjct:   33 WQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYAM 147

HSP 2 Score: 43.1282 bits (100), Expect = 8.503e-60
Identity = 17/31 (54.84%), Postives = 22/31 (70.97%), Query Frame = 3

Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            L+DL +DPP  CSAGPV +D+FH  +   GP
Sbjct:   10 LQDLGRDPPAQCSAGPVGDDLFHWQATIMGP 40

The following BLAST results are available for this feature:

BLAST of CF504207 vs. ExPASy Swiss-Prot

BLAST of CF504207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251


Match Name	E-value	Identity	Description
UB2D3_PONAB	2.942e-60	80.87	Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii...	[more]
UB2D3_MOUSE	2.942e-60	80.87	Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus...	[more]
UB2D3_MACFA	2.942e-60	80.87	Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci...	[more]
UB2D3_HUMAN	2.942e-60	80.87	Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens...	[more]
UB2D2_PIG	2.942e-60	80.87	Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G...	[more]
UB2D1_MOUSE	5.002e-60	80.00	Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus...	[more]
UB2D1_HUMAN	5.002e-60	80.00	Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens...	[more]
UB2D1_BOVIN	5.002e-60	80.00	Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G...	[more]
UBC4_CANAL	6.521e-60	79.13	Ubiquitin-conjugating enzyme E2 4 OS=Candida albic...	[more]
UBCD1_DROME	8.503e-60	80.87	Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_119000-695 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_B11 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504207 ID=CF504207; Name=CF504207; organism=Citrus sinensis; type=EST; length=472bp
AACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGCCCT
GTGGCTGAAGACATGTTCCACCTGGCAAGCAACAATTATGGGCCCTTCTG
ATAGCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCCTCCT
GATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCA
CCCGAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTTAAAGAAC
AGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCTGCTCC
TTGCTTACTGATCCAAATCCCGACGACCCTCTTGTACCGGAGATTGCCCA
CATGTACAAGTCCGACAAGGCCAAATATGAATCCACGGCCAGGAGCTGGA
CACAGAAGTATGCCATGGGATGAAGGGTGTTAGGATATTGCAGAAAAAGG
AGCATTTATTGAAATATGGTGG