CF504207

Overview
NameCF504207
Unique NameCF504207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBCX_YEAST (Ubiquitin-conjugating enzyme E2-21 kDa OS=Saccharomyces cerevisiae GN=PEX4 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.669e-14
Identity = 41/113 (36.28%), Postives = 64/113 (56.64%), Query Frame = 1
Query:   67 STWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAF-RTKVFHPNINS-NGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK-SDKAKYESTAR 393
            S W+A I GPSD+PY    F + I  P  YP  PPK++F +  + H N+ S  G ICL+ILK E+W+P   +   + ++  LL +P  D PL  +I ++ +  D + Y+   +
Sbjct:   59 SKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVK 171          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBE2F_CHICK (NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.486e-14
Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 414
            +Q T++ P +  Y GG F   I  P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  DK  + +    + ++YA
Sbjct:   65 FQLTVI-PDEGYYQGGKFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVEDYIKRYA 184          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBE2F_RAT (NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicus GN=Ube2f PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.730e-13
Identity = 42/116 (36.21%), Postives = 57/116 (49.14%), Query Frame = 1
Query:   88 MGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 414
            + P +  Y GG F      P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  DK  +      + ++YA
Sbjct:   69 VSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKRYA 184          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBE2F_HUMAN (NEDD8-conjugating enzyme UBE2F OS=Homo sapiens GN=UBE2F PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.730e-13
Identity = 42/114 (36.84%), Postives = 57/114 (50.00%), Query Frame = 1
Query:   94 PSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 414
            P +  Y GG F      P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  DK  + +    + ++YA
Sbjct:   71 PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA 184          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UB2FA_MOUSE (NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=Ube2f PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.730e-13
Identity = 42/116 (36.21%), Postives = 57/116 (49.14%), Query Frame = 1
Query:   88 MGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 414
            + P +  Y GG F      P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  DK  +      + ++YA
Sbjct:   69 VSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKRYA 184          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBE2U_HUMAN (Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens GN=UBE2U PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.260e-13
Identity = 40/118 (33.90%), Postives = 68/118 (57.63%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN-GSICLDIL--KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            W+  I G  +S + G VF +TIHF  +Y + PP V F T  FHPN++ + G  C+D L   E+W+   T+S +LL++  +L++P  ++P+  E A +   D++ Y +  R + +   M
Sbjct:   36 WEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRLFNRPLQM 153          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBE2F_BOVIN (NEDD8-conjugating enzyme UBE2F OS=Bos taurus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.260e-13
Identity = 41/114 (35.96%), Postives = 57/114 (50.00%), Query Frame = 1
Query:   94 PSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 414
            P +  Y GG F      P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  DK  + +    + ++YA
Sbjct:   71 PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVEDYIKRYA 184          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: Y1A1_ENCCU (Probable ubiquitin-conjugating enzyme E2 ECU01_1010 OS=Encephalitozoon cuniculi GN=ECU01_1010 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.951e-13
Identity = 36/116 (31.03%), Postives = 57/116 (49.14%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL--------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY 378
            W        DS YAG +    + FP  YP +PP + F +K+FHPNI  +G +C+ IL              K++W+P   I  +++SI  +L  PN   P   + + MY+ +  +Y
Sbjct:   68 WDIYFTLGGDSLYAGRILKAVMKFPSSYPLRPPTLKFVSKMFHPNIYEDGKMCISILEEDKQQDSSVFGDPKDKWTPVQNIRTIVMSIVVILNSPNISSPANVDASVMYRDNPEEY 183          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBE2F_DANRE (NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=ube2f PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.951e-13
Identity = 41/116 (35.34%), Postives = 59/116 (50.86%), Query Frame = 1
Query:   88 MGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 414
            + P +  Y GG F   I  P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  + A  +  DK  + +  + + + YA
Sbjct:   69 ISPDEGYYLGGKFQFEIEVPEAYNMVPPKVKCLTRIWHPNIAETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIDAAEHHLRDKEDFRNKVQDFIKNYA 184          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UB2FB_MOUSE (NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus GN=Ube2fb PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.034e-13
Identity = 42/116 (36.21%), Postives = 57/116 (49.14%), Query Frame = 1
Query:   88 MGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 414
            + P +  Y GG F   I  P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N  DPL  E A  +  DK  +      + ++YA
Sbjct:   69 VSPDEGYYQGGNFQFEIEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSADGTGWAPTRTLKDVVWGLNSLFTDLLNFYDPLNIEAAEHHLQDKEDFRDKVDEYIRRYA 184          
The following BLAST results are available for this feature:
BLAST of CF504207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
UBCX_YEAST2.669e-1436.28Ubiquitin-conjugating enzyme E2-21 kDa OS=Saccharo... [more]
UBE2F_CHICK3.486e-1436.36NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN... [more]
UBE2F_RAT1.730e-1336.21NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicu... [more]
UBE2F_HUMAN1.730e-1336.84NEDD8-conjugating enzyme UBE2F OS=Homo sapiens GN=... [more]
UB2FA_MOUSE1.730e-1336.21NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=... [more]
UBE2U_HUMAN2.260e-1333.90Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens ... [more]
UBE2F_BOVIN2.260e-1335.96NEDD8-conjugating enzyme UBE2F OS=Bos taurus GN=UB... [more]
Y1A1_ENCCU2.951e-1331.03Probable ubiquitin-conjugating enzyme E2 ECU01_101... [more]
UBE2F_DANRE2.951e-1335.34NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=u... [more]
UB2FB_MOUSE5.034e-1336.21NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-695 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504207 ID=CF504207; Name=CF504207; organism=Citrus sinensis; type=EST; length=472bp
AACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGCCCT
GTGGCTGAAGACATGTTCCACCTGGCAAGCAACAATTATGGGCCCTTCTG
ATAGCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCCTCCT
GATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCA
CCCGAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTTAAAGAAC
AGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCTGCTCC
TTGCTTACTGATCCAAATCCCGACGACCCTCTTGTACCGGAGATTGCCCA
CATGTACAAGTCCGACAAGGCCAAATATGAATCCACGGCCAGGAGCTGGA
CACAGAAGTATGCCATGGGATGAAGGGTGTTAGGATATTGCAGAAAAAGG
AGCATTTATTGAAATATGGTGG
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