CF504207

Overview
NameCF504207
Unique NameCF504207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2225 contig Csv1_Contig2225:231..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.403e-31
Identity = 60/115 (52.17%), Postives = 82/115 (71.30%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            +   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WT+ YAM
Sbjct:   35 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.403e-31
Identity = 60/115 (52.17%), Postives = 82/115 (71.30%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            +   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WT+ YAM
Sbjct:   35 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.403e-31
Identity = 63/112 (56.25%), Postives = 81/112 (72.32%), Query Frame = 1
Query:   85 IMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 420
            I+GP+ SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +KS++A+   TA+ WT+ YA G
Sbjct:   41 ILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASG 152          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.403e-31
Identity = 63/112 (56.25%), Postives = 81/112 (72.32%), Query Frame = 1
Query:   85 IMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG 420
            I+GP+ SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +KS++A+   TA+ WT+ YA G
Sbjct:   41 ILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVDTAKEWTRLYASG 152          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.062e-30
Identity = 60/115 (52.17%), Postives = 80/115 (69.57%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 414
            W+AT+ GP  SP+  GVF + I  P DYPFKPP + F TK++HPNI  S+G+IC ++    WSP L I  VL +I S+LTDPNPD+PL  EIA  +K+D+  +  TA+ WT+KYA
Sbjct:   34 WKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFST-WSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYA 147          

HSP 2 Score: 21.9422 bits (45), Expect = 1.062e-30
Identity = 10/31 (32.26%), Postives = 17/31 (54.84%), Query Frame = 3
Query:    3 LKDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            + D+ K PP+ CSA  V +++    +   GP
Sbjct:   11 ITDMLKTPPSWCSAHLVDDNLQKWKATVQGP 41          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.173e-30
Identity = 55/102 (53.92%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY 378
            W A I GP D+P+ GG F +T+HF  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ VL SI SLL DPNPD P   E A ++  +K +Y
Sbjct:   36 WNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREY 137          

HSP 2 Score: 27.7202 bits (60), Expect = 5.173e-30
Identity = 12/30 (40.00%), Postives = 16/30 (53.33%), Query Frame = 3
Query:    6 KDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            K LQKDPP   S  P   ++ H  +  +GP
Sbjct:   14 KRLQKDPPVGISGAPQDNNIMHWNALIFGP 43          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 2.938e-29
Identity = 59/114 (51.75%), Postives = 80/114 (70.18%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 414
            ++  I GP DSP+ GGVF + +    DYP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++ +  + AR WT+ YA
Sbjct:   35 FKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEKEAMARAREWTRLYA 148          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.547e-29
Identity = 54/115 (46.96%), Postives = 80/115 (69.57%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ-WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 414
            W  T +GPSDS YAGG F  ++ FP DYPF+PP + F T+++HPN +S G++CL ILK+Q + P++ +  VL  I  LL +PNPDDPLV  IA  Y++D+  ++  AR + +++A
Sbjct:   39 WACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIARDYVEQFA 153          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.116e-28
Identity = 57/114 (50.00%), Postives = 76/114 (66.67%), Query Frame = 1
Query:   76 QATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 414
            + T +GP  +PY GG F+V I  P +YPFKPPK+ F TKV+HPNI+S  G+ICLDILK  WSP +T+   L+S+ +LL  P P+DP   E+A  Y  D+  +  TA  WT+ YA
Sbjct:   36 KGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 149          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.904e-28
Identity = 60/118 (50.85%), Postives = 83/118 (70.34%), Query Frame = 1
Query:   76 QATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 417
            +A I+G S SPY GG+F + I  P  YPF+PPK+ F T ++HPNI+S G ICLDIL    K  W PAL IS VL SI  L+++PNPDDPL+ +I+  +K ++A + S A+ WT+K+A+
Sbjct:   35 RAQIIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNPDDPLMADISSEFKYNRAVFFSNAKKWTEKHAL 152          
The following BLAST results are available for this feature:
BLAST of CF504207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
UBE2N_HUMAN2.403e-3152.17Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN2.403e-3152.17Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBC36_ARATH2.403e-3156.25Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC35_ARATH2.403e-3156.25Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBCB_DICDI1.062e-3052.17Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UBC3_ARATH5.173e-3053.92Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBE2N_DICDI2.938e-2951.75Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBC14_SCHPO8.547e-2946.96Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBC1_YEAST1.116e-2850.00Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBE2T_XENLA1.904e-2850.85Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-695 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504207 ID=CF504207; Name=CF504207; organism=Citrus sinensis; type=EST; length=472bp
AACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGCCCT
GTGGCTGAAGACATGTTCCACCTGGCAAGCAACAATTATGGGCCCTTCTG
ATAGCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCCTCCT
GATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCA
CCCGAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTTAAAGAAC
AGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCTGCTCC
TTGCTTACTGATCCAAATCCCGACGACCCTCTTGTACCGGAGATTGCCCA
CATGTACAAGTCCGACAAGGCCAAATATGAATCCACGGCCAGGAGCTGGA
CACAGAAGTATGCCATGGGATGAAGGGTGTTAGGATATTGCAGAAAAAGG
AGCATTTATTGAAATATGGTGG
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