CF504207

Overview
NameCF504207
Unique NameCF504207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2225 contig Csv1_Contig2225:231..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.418e-26
Identity = 49/115 (42.61%), Postives = 73/115 (63.48%), Query Frame = 1
Query:   70 TWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----ESTARSW 399
            TW A I+GP+D+P+  G F + +HF   YP KPP V F +++FHPN+   G +CLDIL+ +WSP   ++ +L SI SLL DPN   P   E +++YK ++ +Y     E+  +SW
Sbjct:   35 TWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRETVEKSW 149          

HSP 2 Score: 26.1794 bits (56), Expect = 1.418e-26
Identity = 12/30 (40.00%), Postives = 17/30 (56.67%), Query Frame = 3
Query:    6 KDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            K +Q DPP   SA PVA+++    +   GP
Sbjct:   14 KRMQTDPPAGVSASPVADNVMTWNAVIIGP 43          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 1.782e-26
Identity = 56/111 (50.45%), Postives = 74/111 (66.67%), Query Frame = 1
Query:   85 IMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 414
            I GP D+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:   43 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 1.782e-26
Identity = 56/111 (50.45%), Postives = 74/111 (66.67%), Query Frame = 1
Query:   85 IMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 414
            I GP D+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:   43 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 1.782e-26
Identity = 56/111 (50.45%), Postives = 74/111 (66.67%), Query Frame = 1
Query:   85 IMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 414
            I GP D+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:   43 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.846e-26
Identity = 51/115 (44.35%), Postives = 75/115 (65.22%), Query Frame = 1
Query:   70 TWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----ESTARSW 399
            TW A I+GP+D+P+  G F + + F   YP KPP+V F +++FHPN+ +NG +CLDIL+ +WSP   ++ VL SI SLL DPN   P   E +++YK ++ +Y     E+  RSW
Sbjct:   35 TWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRETVERSW 149          

HSP 2 Score: 23.8682 bits (50), Expect = 1.846e-26
Identity = 10/30 (33.33%), Postives = 16/30 (53.33%), Query Frame = 3
Query:    6 KDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            K +Q DPP   SA P+ +++    +   GP
Sbjct:   14 KRMQTDPPAGVSASPIPDNVMTWNAVIIGP 43          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.403e-26
Identity = 48/117 (41.03%), Postives = 74/117 (63.25%), Query Frame = 1
Query:   70 TWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----ESTARSWTQ 405
            TW A I+GP+D+P+  G F + +HF   YP KPP V F +++FHPN+   G +CLDIL+ +WSP   ++ +L SI SLL DPN   P   E +++Y+ ++ +Y     E+  +SW +
Sbjct:   35 TWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRETVEKSWEE 151          

HSP 2 Score: 26.1794 bits (56), Expect = 2.403e-26
Identity = 12/30 (40.00%), Postives = 17/30 (56.67%), Query Frame = 3
Query:    6 KDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            K +Q DPP   SA PVA+++    +   GP
Sbjct:   14 KRMQTDPPAGVSASPVADNVMTWNAVIIGP 43          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.129e-26
Identity = 50/103 (48.54%), Postives = 70/103 (67.96%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 381
            W A I GP  +P+  G F +TI F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ +K +YE
Sbjct:   36 WNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          

HSP 2 Score: 22.3274 bits (46), Expect = 3.129e-26
Identity = 10/30 (33.33%), Postives = 15/30 (50.00%), Query Frame = 3
Query:    6 KDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            K LQ+DPP   S  P   ++    +  +GP
Sbjct:   14 KRLQEDPPAGVSGAPSENNIMVWNAVIFGP 43          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.129e-26
Identity = 50/103 (48.54%), Postives = 70/103 (67.96%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 381
            W A I GP  +P+  G F +TI F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ +K +YE
Sbjct:   36 WNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          

HSP 2 Score: 22.3274 bits (46), Expect = 3.129e-26
Identity = 10/30 (33.33%), Postives = 15/30 (50.00%), Query Frame = 3
Query:    6 KDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            K LQ+DPP   S  P   ++    +  +GP
Sbjct:   14 KRLQEDPPAGVSGAPSENNIMVWNAVIFGP 43          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.129e-26
Identity = 49/116 (42.24%), Postives = 72/116 (62.07%), Query Frame = 1
Query:   70 TWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTAR-----SWT 402
            TW A I+GP+++P+  G F + + F   YP KPP V F +++FHPN+ S+G +CLDIL+ +WSP   ++ +L S+ SLL DPN   P   E + +YK  + +YE   R     SWT
Sbjct:   35 TWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEKRVRDTVEASWT 150          

HSP 2 Score: 26.5646 bits (57), Expect = 3.129e-26
Identity = 12/30 (40.00%), Postives = 18/30 (60.00%), Query Frame = 3
Query:    6 KDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            K +Q+DPP   SA PVA+++    +   GP
Sbjct:   14 KRMQQDPPQGVSASPVADNVLTWNAVIIGP 43          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.072e-26
Identity = 49/103 (47.57%), Postives = 69/103 (66.99%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 381
            W A I GP  +P+  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ +K +YE
Sbjct:   36 WNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          

HSP 2 Score: 23.483 bits (49), Expect = 4.072e-26
Identity = 10/30 (33.33%), Postives = 15/30 (50.00%), Query Frame = 3
Query:    6 KDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            K LQ+DPP   S  P   ++    +  +GP
Sbjct:   14 KRLQEDPPVGVSGAPSENNIMQWNAVIFGP 43          
The following BLAST results are available for this feature:
BLAST of CF504207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
UBC2_ASPFU1.418e-2642.61Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBE2K_MOUSE1.782e-2650.45Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN1.782e-2650.45Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]
UBE2K_BOVIN1.782e-2650.45Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBC2_TRIHA1.846e-2644.35Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_EMENI2.403e-2641.03Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBE2A_MOUSE3.129e-2648.54Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN3.129e-2648.54Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBC2_YARLI3.129e-2642.24Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBE2B_RAT4.072e-2647.57Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-695 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504207 ID=CF504207; Name=CF504207; organism=Citrus sinensis; type=EST; length=472bp
AACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGCCCT
GTGGCTGAAGACATGTTCCACCTGGCAAGCAACAATTATGGGCCCTTCTG
ATAGCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCCTCCT
GATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCA
CCCGAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTTAAAGAAC
AGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCTGCTCC
TTGCTTACTGATCCAAATCCCGACGACCCTCTTGTACCGGAGATTGCCCA
CATGTACAAGTCCGACAAGGCCAAATATGAATCCACGGCCAGGAGCTGGA
CACAGAAGTATGCCATGGGATGAAGGGTGTTAGGATATTGCAGAAAAAGG
AGCATTTATTGAAATATGGTGG
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