CF504207

Overview
NameCF504207
Unique NameCF504207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.072e-26
Identity = 49/103 (47.57%), Postives = 69/103 (66.99%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 381
            W A I GP  +P+  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ +K +YE
Sbjct:   36 WNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          

HSP 2 Score: 23.483 bits (49), Expect = 4.072e-26
Identity = 10/30 (33.33%), Postives = 15/30 (50.00%), Query Frame = 3
Query:    6 KDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            K LQ+DPP   S  P   ++    +  +GP
Sbjct:   14 KRLQEDPPVGVSGAPSENNIMQWNAVIFGP 43          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.072e-26
Identity = 49/103 (47.57%), Postives = 69/103 (66.99%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 381
            W A I GP  +P+  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ +K +YE
Sbjct:   36 WNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          

HSP 2 Score: 23.483 bits (49), Expect = 4.072e-26
Identity = 10/30 (33.33%), Postives = 15/30 (50.00%), Query Frame = 3
Query:    6 KDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            K LQ+DPP   S  P   ++    +  +GP
Sbjct:   14 KRLQEDPPVGVSGAPSENNIMQWNAVIFGP 43          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.072e-26
Identity = 49/103 (47.57%), Postives = 69/103 (66.99%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 381
            W A I GP  +P+  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ +K +YE
Sbjct:   36 WNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          

HSP 2 Score: 23.483 bits (49), Expect = 4.072e-26
Identity = 10/30 (33.33%), Postives = 15/30 (50.00%), Query Frame = 3
Query:    6 KDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            K LQ+DPP   S  P   ++    +  +GP
Sbjct:   14 KRLQEDPPVGVSGAPSENNIMQWNAVIFGP 43          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.072e-26
Identity = 49/103 (47.57%), Postives = 69/103 (66.99%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 381
            W A I GP  +P+  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ +K +YE
Sbjct:   36 WNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          

HSP 2 Score: 23.483 bits (49), Expect = 4.072e-26
Identity = 10/30 (33.33%), Postives = 15/30 (50.00%), Query Frame = 3
Query:    6 KDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            K LQ+DPP   S  P   ++    +  +GP
Sbjct:   14 KRLQEDPPVGVSGAPSENNIMQWNAVIFGP 43          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.185e-26
Identity = 52/117 (44.44%), Postives = 79/117 (67.52%), Query Frame = 1
Query:   76 QATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 414
            +A I+G +++PY  GVF + +H P  YPF+PP++ F T ++HPNI+S G ICLD+L    K  W P+L I+ +L  I  L+ +PNPDDPL+ +I+  +K +K  +   AR WT+K+A
Sbjct:   35 RAQILGGANTPYEKGVFKLEVHIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATLLTCIQQLMAEPNPDDPLMADISSEFKYNKPVFFKNARQWTEKHA 151          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 5.258e-26
Identity = 47/104 (45.19%), Postives = 72/104 (69.23%), Query Frame = 1
Query:   70 TWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 381
            TW+A I GP ++P+  G F +++ F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   ++ +L SI SLL +PNP+ P     A +Y+ ++ +YE
Sbjct:   35 TWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYE 138          

HSP 2 Score: 25.0238 bits (53), Expect = 5.258e-26
Identity = 10/30 (33.33%), Postives = 16/30 (53.33%), Query Frame = 3
Query:    6 KDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            K LQ+DPP   S  P  +++    +  +GP
Sbjct:   14 KKLQEDPPAGVSGAPTEDNILTWEAIIFGP 43          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 8.982e-26
Identity = 48/113 (42.48%), Postives = 72/113 (63.72%), Query Frame = 1
Query:   70 TWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQK 408
            TW A I+GP+D+P+  G F + + F   YP KPP+V F +++FHPN+ + G +CLDIL+ +WSP   ++ VL SI SLL DPN   P   E +++YK ++ +Y    R   +K
Sbjct:   35 TWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRETVEK 147          

HSP 2 Score: 24.2534 bits (51), Expect = 8.982e-26
Identity = 11/30 (36.67%), Postives = 16/30 (53.33%), Query Frame = 3
Query:    6 KDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            K +Q DPP   SA PV +++    +   GP
Sbjct:   14 KRMQTDPPAGVSASPVPDNVMTWNAVIIGP 43          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.155e-25
Identity = 53/117 (45.30%), Postives = 80/117 (68.38%), Query Frame = 1
Query:   76 QATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 414
            +A I+G +++PY  GVF + +  P  YPF+PP++ F T ++HPNI+S G ICLD+L    K  W P+L I+ VL SI  L+++PNPDDPL+ +I+  +K +K  +   AR WT+K+A
Sbjct:   35 RAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHA 151          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.169e-25
Identity = 48/113 (42.48%), Postives = 71/113 (62.83%), Query Frame = 1
Query:   70 TWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQK 408
            TW A I+GP+D+P+  G F + +HF   YP KPP V F +++FHPN+ + G +CLDIL+ +WSP   ++ VL SI SLL DPN       E +++YK ++ +Y    R   +K
Sbjct:   35 TWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHKRVRETVEK 147          

HSP 2 Score: 24.2534 bits (51), Expect = 1.169e-25
Identity = 11/30 (36.67%), Postives = 16/30 (53.33%), Query Frame = 3
Query:    6 KDLQKDPPTSCSAGPVAEDMFHLASNNYGP 95
            K +Q DPP   SA PV +++    +   GP
Sbjct:   14 KRMQTDPPAGVSASPVPDNVMTWNAVIIGP 43          
BLAST of CF504207 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.509e-25
Identity = 51/114 (44.74%), Postives = 73/114 (64.04%), Query Frame = 1
Query:   73 WQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----ESTARSW 399
            W A I+GP+D+PY  G F + + F  DYP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  K++Y     E+  +SW
Sbjct:   36 WNAMIIGPADTPYEDGTFRLLLEFDEDYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYIKRVKETVEKSW 149          
The following BLAST results are available for this feature:
BLAST of CF504207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
UBE2B_RABIT4.072e-2647.57Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE4.072e-2647.57Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN4.072e-2647.57Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN4.072e-2647.57Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBE2T_BOVIN5.185e-2644.44Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN... [more]
UBC1_CAEEL5.258e-2645.19Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBC2_NECHA8.982e-2642.48Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]
UBE2T_HUMAN1.155e-2545.30Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UBC2_NEUCR1.169e-2542.48Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBC2_CANGA1.509e-2544.74Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-695 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504207 ID=CF504207; Name=CF504207; organism=Citrus sinensis; type=EST; length=472bp
AACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGCCCT
GTGGCTGAAGACATGTTCCACCTGGCAAGCAACAATTATGGGCCCTTCTG
ATAGCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCCTCCT
GATTATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCA
CCCGAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTTAAAGAAC
AGTGGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCTGCTCC
TTGCTTACTGATCCAAATCCCGACGACCCTCTTGTACCGGAGATTGCCCA
CATGTACAAGTCCGACAAGGCCAAATATGAATCCACGGCCAGGAGCTGGA
CACAGAAGTATGCCATGGGATGAAGGGTGTTAGGATATTGCAGAAAAAGG
AGCATTTATTGAAATATGGTGG
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