CF504316

Overview
NameCF504316
Unique NameCF504316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length384
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase rnf181 OS=Danio rerio GN=rnf181 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.986e-11
Identity = 31/70 (44.29%), Postives = 35/70 (50.00%), Query Frame = 3
Query:  174 PASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383
            PA+KA                    C VC   FE     REMPCKH++H  CILPWL   NSCP+CR EL
Sbjct:   54 PAAKAVVQSLPVVIISPEQADKGVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPLCRLEL 123          
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.424e-11
Identity = 32/93 (34.41%), Postives = 43/93 (46.24%), Query Frame = 3
Query:  105 GFHLLLHQLSQIDLTALSRPENLPASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383
            G   L +++   DL  +    +LP   A                ++  C VC   FE      EMPC H++H +CILPWL   NSCP+CR EL
Sbjct:   40 GGRSLFNRMDFEDLGLVDWEHHLPPPAAKAVVESLPRTVISSAKADLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHEL 132          
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: RN115_HUMAN (RING finger protein 115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.778e-11
Identity = 26/70 (37.14%), Postives = 37/70 (52.86%), Query Frame = 3
Query:  174 PASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383
            PA K               V     C VCKE + +  E R++PC H +H  CI+PWL++ ++CPVCR+ L
Sbjct:  203 PADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 272          
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: RN181_RAT (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.546e-11
Identity = 33/93 (35.48%), Postives = 43/93 (46.24%), Query Frame = 3
Query:  105 GFHLLLHQLSQIDLTALSRPENLPASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383
            G   L +++   DL  +    +LP   A                +E  C VC   FE      EMPC H++H +CILPWL   NSCP+CR EL
Sbjct:   40 GSRSLFNRMDFEDLGLVDWEHHLPPPAAKAVVESLPRTVIRSSKAELKCPVCLLEFEEEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHEL 132          
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.546e-11
Identity = 27/49 (55.10%), Postives = 32/49 (65.31%), Query Frame = 3
Query:  237 SECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383
            +E  C VC   FE    A EMPC H++H +CILPWL   NSCP+CR EL
Sbjct:   72 AELKCPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTNSCPLCRHEL 120          
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: RN115_MOUSE (RING finger protein 115 OS=Mus musculus GN=Rnf115 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.546e-11
Identity = 25/70 (35.71%), Postives = 39/70 (55.71%), Query Frame = 3
Query:  174 PASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383
            PA K               V++   C VCKE + +  + R++PC H +H  CI+PWL++ ++CPVCR+ L
Sbjct:  204 PADKEKITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 273          
The following BLAST results are available for this feature:
BLAST of CF504316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RN181_DANRE1.986e-1144.29E3 ubiquitin-protein ligase rnf181 OS=Danio rerio ... [more]
RN181_MOUSE4.424e-1134.41E3 ubiquitin-protein ligase RNF181 OS=Mus musculus... [more]
RN115_HUMAN5.778e-1137.14RING finger protein 115 OS=Homo sapiens GN=RNF115 ... [more]
RN181_RAT7.546e-1135.48E3 ubiquitin-protein ligase RNF181 OS=Rattus norve... [more]
RN181_BOVIN7.546e-1155.10E3 ubiquitin-protein ligase RNF181 OS=Bos taurus G... [more]
RN115_MOUSE7.546e-1135.71RING finger protein 115 OS=Mus musculus GN=Rnf115 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-805 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504316 ID=CF504316; Name=CF504316; organism=Citrus sinensis; type=EST; length=384bp
ACAGTAGCGGCAGCAGCTTTGATCTGTACTATGAGGACGGTCAGGGGTCA
GAGTCAACTCTAAGGCCGATACCAGAAAGAGTTTTAGGGTTCTTGATGGA
TTCAGGATTTCATCTGTTACTTCATCAACTGTCTCAGATTGATCTAACGG
CGCTATCCCGGCCGGAGAATCTGCCGGCATCAAAAGCTTCGATCGAGTCG
ATGCCAAGCATAGAGATTTCGTCAGGCCACGTAAGTTCAGAGTGTCACTG
TGCAGTATGTAAAGAGGCGTTTGAGCTTGGAAACGAGGCGAGAGAGATGC
CGTGCAAGCATATATACCATGAAGATTGTATTCTCCCGTGGCTCAAAATG
CGAAACTCGTGCCCGGTTTGCAGGCAAGAGCTAC
back to top