CF504316
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase rnf181 OS=Danio rerio GN=rnf181 PE=2 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 1.986e-11 Identity = 31/70 (44.29%), Postives = 35/70 (50.00%), Query Frame = 3 Query: 174 PASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383 PA+KA C VC FE REMPCKH++H CILPWL NSCP+CR EL Sbjct: 54 PAAKAVVQSLPVVIISPEQADKGVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPLCRLEL 123
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.424e-11 Identity = 32/93 (34.41%), Postives = 43/93 (46.24%), Query Frame = 3 Query: 105 GFHLLLHQLSQIDLTALSRPENLPASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383 G L +++ DL + +LP A ++ C VC FE EMPC H++H +CILPWL NSCP+CR EL Sbjct: 40 GGRSLFNRMDFEDLGLVDWEHHLPPPAAKAVVESLPRTVISSAKADLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHEL 132
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: RN115_HUMAN (RING finger protein 115 OS=Homo sapiens GN=RNF115 PE=1 SV=2) HSP 1 Score: 66.2402 bits (160), Expect = 5.778e-11 Identity = 26/70 (37.14%), Postives = 37/70 (52.86%), Query Frame = 3 Query: 174 PASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383 PA K V C VCKE + + E R++PC H +H CI+PWL++ ++CPVCR+ L Sbjct: 203 PADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 272
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: RN181_RAT (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181 PE=1 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.546e-11 Identity = 33/93 (35.48%), Postives = 43/93 (46.24%), Query Frame = 3 Query: 105 GFHLLLHQLSQIDLTALSRPENLPASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383 G L +++ DL + +LP A +E C VC FE EMPC H++H +CILPWL NSCP+CR EL Sbjct: 40 GSRSLFNRMDFEDLGLVDWEHHLPPPAAKAVVESLPRTVIRSSKAELKCPVCLLEFEEEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHEL 132
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.546e-11 Identity = 27/49 (55.10%), Postives = 32/49 (65.31%), Query Frame = 3 Query: 237 SECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383 +E C VC FE A EMPC H++H +CILPWL NSCP+CR EL Sbjct: 72 AELKCPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTNSCPLCRHEL 120
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: RN115_MOUSE (RING finger protein 115 OS=Mus musculus GN=Rnf115 PE=2 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.546e-11 Identity = 25/70 (35.71%), Postives = 39/70 (55.71%), Query Frame = 3 Query: 174 PASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383 PA K V++ C VCKE + + + R++PC H +H CI+PWL++ ++CPVCR+ L Sbjct: 204 PADKEKITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 273 The following BLAST results are available for this feature:
BLAST of CF504316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504316 ID=CF504316; Name=CF504316; organism=Citrus sinensis; type=EST; length=384bpback to top |