CF504316
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.523e-14 Identity = 30/70 (42.86%), Postives = 40/70 (57.14%), Query Frame = 3 Query: 174 PASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383 PA K HV S C VCKE + LG R++PC H++H+ CI+PWL+ +SCPVCR+ L Sbjct: 206 PADKEKIQALPTVPVTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.624e-13 Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 3 Query: 228 HVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383 HV S C VCKE + +G R++PC H++H DCI+PWL+ ++CPVCR+ L Sbjct: 220 HVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: RN126_HUMAN (RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.771e-13 Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 3 Query: 174 PASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383 PA K HV S C VCK+ + LG R++PC H++H+ CI+PWL+ +SCPVCR+ L Sbjct: 204 PADKEKIQALPTVPVTEEHVGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 273
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: RN126_BOVIN (RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.619e-13 Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 3 Query: 174 PASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383 PA K HV S C VCK+ + LG R++PC H++H+ CI+PWL+ +SCPVCR+ L Sbjct: 207 PADKEKIQALPTVPVTEEHVGSGLECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 276
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.726e-13 Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 3 Query: 228 HVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383 HV S C VCKE + +G R++PC H++H DCI+PWL+ ++CPVCR+ L Sbjct: 221 HVGSGLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 8.062e-13 Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 3 Query: 228 HVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383 HV C VCKE + +G R++PC H++H DCI+PWL+ ++CPVCR+ L Sbjct: 221 HVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.825e-12 Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 3 Query: 249 CAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383 CAVCK+ +G +++PC H YH DCI+PWL RNSCPVCR +L Sbjct: 257 CAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQL 301
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: RN181_DROME (E3 ubiquitin-protein ligase CG7694 OS=Drosophila melanogaster GN=CG7694 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 8.914e-12 Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 3 Query: 240 ECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383 + C+VCKE E G + R +PCKH +HE+CIL WLK NSCP+CR EL Sbjct: 67 DLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTNSCPLCRYEL 114
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: RN181_XENLA (E3 ubiquitin-protein ligase rnf181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.164e-11 Identity = 32/85 (37.65%), Postives = 41/85 (48.24%), Query Frame = 3 Query: 129 LSQIDLTALSRPENLPASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383 L +D T + PASK + C VC FE G R++PC+H++H CILPWL NSCP+CR EL Sbjct: 39 LGAVDFTEWDQRLPPPASKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHEL 123
BLAST of CF504316 vs. ExPASy Swiss-Prot
Match: RN181_XENTR (E3 ubiquitin-protein ligase rnf181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.986e-11 Identity = 31/85 (36.47%), Postives = 41/85 (48.24%), Query Frame = 3 Query: 129 LSQIDLTALSRPENLPASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNEAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 383 L +D T + PA+K + C VC FE G R++PC+H++H CILPWL NSCP+CR EL Sbjct: 39 LGALDFTEWDQRLPPPAAKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHEL 123 The following BLAST results are available for this feature:
BLAST of CF504316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504316 ID=CF504316; Name=CF504316; organism=Citrus sinensis; type=EST; length=384bpback to top |