CF504349

Overview
NameCF504349
Unique NameCF504349
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11641 contig Csv1_Contig11641:48..311. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504349 vs. ExPASy Swiss-Prot
Match: PUB30_ARATH (U-box domain-containing protein 30 OS=Arabidopsis thaliana GN=PUB30 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.252e-12
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 3
Query:   72 KKMVRQELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQIL 251
            KKM+++     +P++F CPISL+ M+ PV+LCTG TY+R +I  W   GH TCP TMQ L
Sbjct:   53 KKMIKELDLQDIPSVFICPISLEPMQDPVTLCTGQTYERLNIHKWFNLGHLTCPTTMQEL 112          
BLAST of CF504349 vs. ExPASy Swiss-Prot
Match: PUB16_ARATH (U-box domain-containing protein 16 OS=Arabidopsis thaliana GN=PUB16 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.528e-11
Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 3
Query:  105 VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQIL 251
            +P  FRCPI+L++M+ PV + TG TYDR SI  W++SGH+TCP T Q+L
Sbjct:  274 IPADFRCPITLELMRDPVVVATGQTYDRESIDLWIQSGHNTCPKTGQVL 322          
BLAST of CF504349 vs. ExPASy Swiss-Prot
Match: PUB26_ARATH (U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.404e-11
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 3
Query:   90 ELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILS 254
            +L I +P  FRCPISLD+M  PV++ TG TYDR+SI  W+  G+ TCP T   LS
Sbjct:    9 DLGIQIPYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWIAMGNTTCPVTRVALS 63          
BLAST of CF504349 vs. ExPASy Swiss-Prot
Match: PUB22_ARATH (U-box domain-containing protein 22 OS=Arabidopsis thaliana GN=PUB22 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.404e-11
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 3
Query:   99 IAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESG-HDTCPATMQILS 254
            I +P+ F CPISLD+MK PV + TG+TYDR SI+ WL SG  ++CP T Q+++
Sbjct:    5 IEIPSFFLCPISLDIMKDPVIVSTGITYDRESIEKWLFSGKKNSCPVTKQVIT 57          
BLAST of CF504349 vs. ExPASy Swiss-Prot
Match: PUB13_ARATH (U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.446e-11
Identity = 26/51 (50.98%), Postives = 39/51 (76.47%), Query Frame = 3
Query:  105 VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST 257
            +P+ FRCPISL++M+ PV + +G TY+R+ I+ W+E GH TCP T Q L++
Sbjct:  256 IPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTS 306          
BLAST of CF504349 vs. ExPASy Swiss-Prot
Match: PUB25_ARATH (U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.905e-11
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 3
Query:   90 ELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHD-TCPATMQILS 254
            +L I +P  FRCPISL++M+ PV++CTG TYDR+SI+ W+  G++ TCP T   LS
Sbjct:    9 DLGIQIPYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTRAPLS 64          
The following BLAST results are available for this feature:
BLAST of CF504349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PUB30_ARATH5.252e-1251.67U-box domain-containing protein 30 OS=Arabidopsis ... [more]
PUB16_ARATH1.528e-1157.14U-box domain-containing protein 16 OS=Arabidopsis ... [more]
PUB26_ARATH3.404e-1154.55U-box domain-containing protein 26 OS=Arabidopsis ... [more]
PUB22_ARATH3.404e-1154.72U-box domain-containing protein 22 OS=Arabidopsis ... [more]
PUB13_ARATH4.446e-1150.98U-box domain-containing protein 13 OS=Arabidopsis ... [more]
PUB25_ARATH9.905e-1153.57U-box domain-containing protein 25 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-838 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504349 ID=CF504349; Name=CF504349; organism=Citrus sinensis; type=EST; length=264bp
CTAGTTCTCTCTCTGAAATCATCTGTTTCTATCTGTAGAGAAGCCAAACC
CAAACAAAGAATTAAAAGAGAAAAAAAATGGTGAGACAAGAACTTTACAT
AGCAGTACCGAATTTATTCCGGTGCCCGATTTCCTTGGACGTAATGAAGT
CTCCGGTGAGTCTCTGCACAGGTGTCACCTACGATCGCTCCAGCATCCAG
CACTGGCTCGAATCCGGCCACGACACTTGCCCCGCCACCATGCAAATCCT
GTCCACTAAGGAAT
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