CF504515

Overview
NameCF504515
Unique NameCF504515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length387
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7102 contig Csv1_Contig7102:472..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.482e-27
Identity = 53/119 (44.54%), Postives = 75/119 (63.03%), Query Frame = 3
Query:   15 FGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMT 371
            FG TG    + +EI AFL     +T+ G+  A  GP AWG C+  E +PS +YC  + ++  PC PG +YYGRG I I WNYNYG  G A+  DLLN P+ +  ++ ++F++A+W WMT
Sbjct:  118 FGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPS-TYCSATPQF--PCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMT 233          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.482e-27
Identity = 55/121 (45.45%), Postives = 74/121 (61.16%), Query Frame = 3
Query:   12 GFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTP 374
            GFGTTG    + +EI AFLA    +T+ G+  A  GP AWG C+  E      YC  S ++  PC PG +Y+GRG I I  NYNYG  G A+  DLLN+P+ +  +  ++F++AIW WMTP
Sbjct:  114 GFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQW--PCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTP 232          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.482e-27
Identity = 53/119 (44.54%), Postives = 75/119 (63.03%), Query Frame = 3
Query:   15 FGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMT 371
            FG TG    + +EI AFL     +T+ G+  A  GP AWG C+  E +PS +YC  + ++  PC PG +YYGRG I I WNYNYG  G A+  DLLN P+ +  ++ ++F++A+W WMT
Sbjct:  117 FGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPS-AYCSATPQF--PCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMT 232          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.482e-27
Identity = 55/120 (45.83%), Postives = 74/120 (61.67%), Query Frame = 3
Query:   12 GFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMT 371
            GFGTTG    + +E+ AF A    +T+ G+  A  G  AWG CY  E     SYC  S ++  PC PG +YYGRG I I +NYNYG  G A+  +LLN+P+ +  NA ++F++AIW WMT
Sbjct:  126 GFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQSSQW--PCAPGQKYYGRGPIQISYNYNYGPCGRAIGQNLLNNPDLVATNAVVSFKSAIWFWMT 243          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.482e-27
Identity = 55/121 (45.45%), Postives = 75/121 (61.98%), Query Frame = 3
Query:   12 GFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTP 374
            GFGTTG    + +EI AFLA    +T+ G+  A  GP AWG C+  E      YC  S ++  PC PG +Y+GRG I I  NYNYG  G A+  DLLN+P+ +  ++ ++F++AIW WMTP
Sbjct:  110 GFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQW--PCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTP 228          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.772e-27
Identity = 50/120 (41.67%), Postives = 75/120 (62.50%), Query Frame = 3
Query:   15 FGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTP 374
            FG TG    + +E+ AFL     +T+ G+  A  GP +WG C+  E +P   YC  S ++  PC PG +YYGRG I + +N+NYG  G A+  DLL++P+ +  +AT++F+ A+W WMTP
Sbjct:  131 FGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEW--PCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTP 248          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.276e-26
Identity = 54/121 (44.63%), Postives = 74/121 (61.16%), Query Frame = 3
Query:   12 GFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTP 374
            GFGTTG    + +EI AF A    +T+ G+  A  GP AWG C+  E      YC  S ++  PC PG +Y+GRG I I  NYNYG  G A+  DLLN+P+ +  ++ ++F++AIW WMTP
Sbjct:  110 GFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQW--PCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTP 228          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.667e-26
Identity = 54/121 (44.63%), Postives = 73/121 (60.33%), Query Frame = 3
Query:   12 GFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTP 374
            GFGTTG    + +EI AF A    +T+ G+  A  GP AWG C+  E      YC  S ++  PC PG +Y+GRG I I  NYNYG  G A+  DLLN+P+ +  +  ++F++AIW WMTP
Sbjct:  120 GFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSGQW--PCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTP 238          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.667e-26
Identity = 54/121 (44.63%), Postives = 74/121 (61.16%), Query Frame = 3
Query:   12 GFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTP 374
            GFGTTG    + +EI AF A    +T+ G+  A  GP AWG C+  E      YC  S ++  PC PG +Y+GRG I I  NYNYG  G A+  DLLN+P+ +  ++ ++F++AIW WMTP
Sbjct:  108 GFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTPSNQW--PCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSIISFKSAIWFWMTP 226          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.667e-26
Identity = 54/120 (45.00%), Postives = 72/120 (60.00%), Query Frame = 3
Query:   12 GFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMT 371
            GFGTTG+   + +E+ AFLA    +T+ G+  A  G  AWG C+  E   S  YC  S ++  PC PG  YYGRG I +  NYNYG  G A+  DLL +P+ +  +AT+ F+ AIW WMT
Sbjct:   66 GFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQW--PCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMT 183          
The following BLAST results are available for this feature:
BLAST of CF504515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CHIT_PHAVU7.482e-2744.54Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIC_SOLLC7.482e-2745.45Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI5_PHAVU7.482e-2744.54Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI3_TOBAC7.482e-2745.83Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI3_SOLTU7.482e-2745.45Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_ORYSJ9.772e-2741.67Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_SOLTU1.276e-2644.63Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI4_SOLTU1.667e-2644.63Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_SOLTU1.667e-2644.63Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_HORVU1.667e-2645.0026 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-004 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504515 ID=CF504515; Name=CF504515; organism=Citrus sinensis; type=EST; length=387bp
ATCAGCCCCTCGGCTTCGGTACCACCGGTACTAAGCTTGATAAGATGAAG
GAGATTTGCGCTTTTCTTGCCCACGTGGGCTGCAAGACCTCTTGTGGATA
TGGAGTGGCCACTGGAGGACCATTGGCCTGGGGACTTTGCTACAACCATG
AAATGAGCCCCAGTCAGTCATATTGTGATGATTCCTACAAATACACATAT
CCCTGCACCCCTGGAGCTGAGTACTATGGCCGAGGTGCTATACCTATATA
CTGGAACTATAACTATGGAGCCACTGGGGAAGCATTGAAGGCAGATCTGT
TGAATCATCCCGAATACATTGAGCAGAATGCTACCCTTGCCTTTGAGGCT
GCAATTTGGAAGTGGATGACCCCAGTCAAGAAATCCC
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