CF504515

Overview
NameCF504515
Unique NameCF504515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length387
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.334e-26
Identity = 51/120 (42.50%), Postives = 73/120 (60.83%), Query Frame = 3
Query:   12 GFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMT 371
            GFGTTG+   + +E+ AFLA    +T+ G+  A  G  AWG C+  E   + +YC  S ++  PC PG  YYGRG I +  NYNYG  G A+  DLL +P+ +  + T++F+ A+W WMT
Sbjct:  121 GFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQW--PCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMT 238          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.334e-26
Identity = 52/121 (42.98%), Postives = 73/121 (60.33%), Query Frame = 3
Query:   12 GFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTP 374
            GFGT+G    + +EI AF A    +T+ G+  A  GP AWG C+  E      YC  S ++  PC PG +Y+GRG I I  NYNYG  G A+  DLLN+P+ +  +  ++F++A+W WMTP
Sbjct:  116 GFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQW--PCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTP 234          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.334e-26
Identity = 53/120 (44.17%), Postives = 72/120 (60.00%), Query Frame = 3
Query:   15 FGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTP 374
            F   G    K +EI AFL     +T+ G+  A  GP AWG C+  E +PS +YC  S ++  PC  G +YYGRG I I WNYNYG  G A+  DLLN+P+ +  +  ++F+ A+W WMTP
Sbjct:  110 FANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPS-TYCQASSEF--PCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTP 226          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.334e-26
Identity = 52/121 (42.98%), Postives = 73/121 (60.33%), Query Frame = 3
Query:   12 GFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTP 374
            GFGT+G    + +EI AF A    +T+ G+  A  GP AWG C+  E      YC  S ++  PC PG +Y+GRG I I  NYNYG  G A+  DLLN+P+ +  +  ++F++A+W WMTP
Sbjct:  121 GFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQW--PCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTP 239          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 114.775 bits (286), Expect = 1.411e-25
Identity = 51/120 (42.50%), Postives = 72/120 (60.00%), Query Frame = 3
Query:   12 GFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMT 371
            GFGTTG    + +E+ AFLA    +T+ G+  A  G  AWG C+  E   + +YC  S ++  PC PG  YYGRG I +  NYNYG  G A+  DLL +P+ +  + T++F+ A+W WMT
Sbjct:  118 GFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQW--PCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMT 235          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.143e-25
Identity = 49/120 (40.83%), Postives = 73/120 (60.83%), Query Frame = 3
Query:   15 FGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTP 374
            F  TG    + +E+ AFL     +T+ G+  A  GP +WG C+  E+  + SYC  S ++  PC P  +Y+GRG I + +NYNYG  GEA+  DLLN+PE +  +  ++F+ A+W WMTP
Sbjct:  128 FAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYCVPSAEW--PCAPDKKYFGRGPIQLSYNYNYGPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTP 245          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.105e-25
Identity = 52/121 (42.98%), Postives = 72/121 (59.50%), Query Frame = 3
Query:   12 GFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTP 374
            GFGT+G    + +EI AF A    +T+ G+  A  GP AWG C+  E      YC  S ++  PC PG +Y+GRG I I  NYNYG  G A+  DLLN+P+ +  +  ++F+ A+W WMTP
Sbjct:  120 GFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNPGDYCPPSSQW--PCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTP 238          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.362e-25
Identity = 51/121 (42.15%), Postives = 70/121 (57.85%), Query Frame = 3
Query:   12 GFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTP 374
            GFG TG    + +E+ AF A    +TS    +    P  WG C  +E++P+  YCD   K +YPC   A+YYGRG + + WNYNYG  G  L  +LL+ PE +  +  L+FEAA+W WM P
Sbjct:  104 GFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCV--ADYYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNP 222          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.146e-25
Identity = 49/120 (40.83%), Postives = 71/120 (59.17%), Query Frame = 3
Query:   12 GFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMT 371
            GFG TG+   + +++ AFLA    +T+ G+  A  G  AWG C+  E   +  YC  S ++  PC PG  YYGRG I +  NYNYG  G A+  DLL +P+ +  + T++F+ A+W WMT
Sbjct:   66 GFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQW--PCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMT 183          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.146e-25
Identity = 52/121 (42.98%), Postives = 76/121 (62.81%), Query Frame = 3
Query:   15 FGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQ-SYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTP 374
            F TTG      +E+ AFLA    +T+ G+  A  GP +WG C+  E + +  +YC+   K  +PC  G +YYGRG I I +NYNYG  G+A+ +DLLN+P+ +  +AT++F+ A W WMTP
Sbjct:  118 FATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEP--KPEWPCAAGKKYYGRGPIQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTP 236          
The following BLAST results are available for this feature:
BLAST of CF504515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CHIA_SECCE6.334e-2642.50Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI2_TOBAC6.334e-2642.98Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI2_PEA6.334e-2644.17Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI1_TOBAC6.334e-2642.98Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI1_HORVU1.411e-2542.5026 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI9_ORYSJ3.143e-2540.83Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_SOLTU4.105e-2542.98Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI8_POPTR5.362e-2542.15Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIC_SECCE9.146e-2540.83Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI3_ORYSJ9.146e-2542.98Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-004 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504515 ID=CF504515; Name=CF504515; organism=Citrus sinensis; type=EST; length=387bp
ATCAGCCCCTCGGCTTCGGTACCACCGGTACTAAGCTTGATAAGATGAAG
GAGATTTGCGCTTTTCTTGCCCACGTGGGCTGCAAGACCTCTTGTGGATA
TGGAGTGGCCACTGGAGGACCATTGGCCTGGGGACTTTGCTACAACCATG
AAATGAGCCCCAGTCAGTCATATTGTGATGATTCCTACAAATACACATAT
CCCTGCACCCCTGGAGCTGAGTACTATGGCCGAGGTGCTATACCTATATA
CTGGAACTATAACTATGGAGCCACTGGGGAAGCATTGAAGGCAGATCTGT
TGAATCATCCCGAATACATTGAGCAGAATGCTACCCTTGCCTTTGAGGCT
GCAATTTGGAAGTGGATGACCCCAGTCAAGAAATCCC
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