CF504515

Overview
NameCF504515
Unique NameCF504515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length387
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.291e-18
Identity = 38/82 (46.34%), Postives = 53/82 (64.63%), Query Frame = 3
Query:  138 CYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVK 380
            CY  E++  S+ YCD++ +  YPC PG  Y+GRG I + WNYNYGA G++L  +LL  PE +  N T+AF   +W WM  V+
Sbjct:  137 CYIEEINGASRDYCDENNRQ-YPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVR 217          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.291e-18
Identity = 44/119 (36.97%), Postives = 61/119 (51.26%), Query Frame = 3
Query:   15 FGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMT 371
            FGTTG    + +E+ AF      +T+ G+  A  GP AWG C  +E++PS                   YYGRG I +   YNY   G+AL  DL+N+P+ +  +  +AF  AIW WMT
Sbjct:   68 FGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSDP----------------PYYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMT 170          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 1.083e-17
Identity = 43/120 (35.83%), Postives = 71/120 (59.17%), Query Frame = 3
Query:   15 FGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQS-YCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMT 371
            FGT G    + +E+ AFLAH+   TS G       P AWGLC+ +  + +++ +C  S    +PC  G +Y  RG I +  N+NYG  G+A+  DL+ +P+ +E++  ++F+ A+W WM+
Sbjct:  170 FGTIGDVATRKREVAAFLAHISQATS-GERSDVENPHAWGLCHINTTTVTENDFCTSS---DWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMS 285          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.412e-17
Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 3
Query:   15 FGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPV 377
            FG TG+  D  +EI AF AH   +T                CY  E+  PS++YCD++    +PC  G  YYGRG + I WN+NYG  G+++  D L  P+ + ++  LAF+ A+W W   V
Sbjct:  109 FGRTGSVDDSKREIAAFFAHANHETI-------------KFCYIEEIDGPSKNYCDET-STQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTNNV 216          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.484e-16
Identity = 43/120 (35.83%), Postives = 65/120 (54.17%), Query Frame = 3
Query:   12 GFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSP-SQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWM 368
            GFGT  T  D+ +EI A+ AHV  +T               LCY  E    + +YC +S +Y  PC P  EY+GRG + + WNYNY   G+ L  D LN P+ + ++  ++F+ ++W W+
Sbjct:   86 GFGTKCTDEDRKREIAAYFAHVTHETG-------------HLCYIEERDGHANNYCQESQQY--PCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI 190          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.258e-15
Identity = 42/123 (34.15%), Postives = 60/123 (48.78%), Query Frame = 3
Query:   15 FGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVK 380
            FG  G++ D  +EI A  AH   +T                CY  E+   S+ YCD+     YPC+    Y+GRG I + WN+NYG  G A   D L  PE +  +  ++F+ A+W WM  V+
Sbjct:  109 FGRVGSEDDSKREIAAAFAHFTHETG-------------HFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQHVR 218          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.570e-15
Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = 3
Query:   12 GFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTP 374
            GFGTTG    + KEI AF      +T+ G  ++  GP A G C+  E +                  G  YYGRG I +    NY   G+A++ DL+N+P+ +  +AT++F+ AIW WMTP
Sbjct:   67 GFGTTGDDTARKKEIAAFFGQTSHETTGGT-LSPDGPYAGGYCFLREGNQM----------------GNGYYGRGPIQLTGQSNYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTP 170          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.464e-14
Identity = 41/120 (34.17%), Postives = 61/120 (50.83%), Query Frame = 3
Query:   15 FGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTP 374
            F TTG+   + +E+ AFLA    +T+ G+  A  GP                         Y     ++Y+GRG I I +NYNYGA G+A+  DLL +P+ +  + T+ F+ A+W WMTP
Sbjct:   35 FATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGP-------------------------YELGSTSDYFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTP 129          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.261e-14
Identity = 42/120 (35.00%), Postives = 62/120 (51.67%), Query Frame = 3
Query:   12 GFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMT 371
            GFGTTG    + KEI AF      +T+ G  ++  GP A G C+  E +                  G+ +YGRG I +    NY   G+A+  DL+N+P+ +  +AT++F+ AIW WMT
Sbjct:   60 GFGTTGDDTARKKEIAAFFGQTSHETTGG-SLSADGPFAGGYCFVREGNQM----------------GSGFYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMT 162          
BLAST of CF504515 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.049e-12
Identity = 40/121 (33.06%), Postives = 58/121 (47.93%), Query Frame = 3
Query:   12 GFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTP 374
            GFGT+G    + KEI AF      +T+ G    +  P   G C+  +   S                   YYGRG I +    NY   G A++ DL+N+P+ +  +AT++F+ AIW WMTP
Sbjct:   68 GFGTSGDDTARRKEIAAFFGQTSHETTGGS--LSAEPFTGGYCFVRQNDQSD-----------------RYYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTP 169          
The following BLAST results are available for this feature:
BLAST of CF504515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CHI4_BRANA8.291e-1846.34Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHI11_ORYSJ8.291e-1836.97Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
AGI_URTDI1.083e-1735.83Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI6_ORYSJ2.412e-1736.89Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_DIOJA3.484e-1635.83Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_PHAVU2.258e-1534.15Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIT_PETHY6.570e-1536.36Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIT_AVESA1.464e-1434.17Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHIB_SOLLC3.261e-1435.00Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIP_TOBAC1.049e-1233.06Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-004 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504515 ID=CF504515; Name=CF504515; organism=Citrus sinensis; type=EST; length=387bp
ATCAGCCCCTCGGCTTCGGTACCACCGGTACTAAGCTTGATAAGATGAAG
GAGATTTGCGCTTTTCTTGCCCACGTGGGCTGCAAGACCTCTTGTGGATA
TGGAGTGGCCACTGGAGGACCATTGGCCTGGGGACTTTGCTACAACCATG
AAATGAGCCCCAGTCAGTCATATTGTGATGATTCCTACAAATACACATAT
CCCTGCACCCCTGGAGCTGAGTACTATGGCCGAGGTGCTATACCTATATA
CTGGAACTATAACTATGGAGCCACTGGGGAAGCATTGAAGGCAGATCTGT
TGAATCATCCCGAATACATTGAGCAGAATGCTACCCTTGCCTTTGAGGCT
GCAATTTGGAAGTGGATGACCCCAGTCAAGAAATCCC
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