CF504529 | Citrus Genome Database

Overview


Name	CF504529
Unique Name	CF504529
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	473

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: ATG8_NEOFI (Autophagy-related protein 8 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=atg8 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 9.464e-43
Identity = 82/102 (80.39%), Postives = 92/102 (90.20%), Query Frame = 3

Query:   54 RPESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            + E+ RIR+KY DRIPVI EK E+SDI  IDKKKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV  +LPPTAA+MS+IYEE+KDEDGFLY+TYSGENTFG
Sbjct:   15 KAEAERIRQKYADRIPVICEKVEKSDIATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116

HSP 2 Score: 23.8682 bits (50), Expect = 9.464e-43
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 2

Query:   14 KSSFKLEHPLERRQA 58
            +S FK EHP E+R+A
Sbjct:    2 RSKFKDEHPFEKRKA 16

BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: ATG8_ASPTN (Autophagy-related protein 8 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=atg8 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 9.464e-43
Identity = 82/102 (80.39%), Postives = 92/102 (90.20%), Query Frame = 3

Query:   54 RPESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            + E+ RIR+KY DRIPVI EK E+SDI  IDKKKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV  +LPPTAA+MS+IYEE+KDEDGFLY+TYSGENTFG
Sbjct:   15 KAEAERIRQKYADRIPVICEKVEKSDIATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116

HSP 2 Score: 23.8682 bits (50), Expect = 9.464e-43
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 2

Query:   14 KSSFKLEHPLERRQA 58
            +S FK EHP E+R+A
Sbjct:    2 RSKFKDEHPFEKRKA 16

BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: ATG8_ASPOR (Autophagy-related protein 8 OS=Aspergillus oryzae GN=atg8 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 9.464e-43
Identity = 82/102 (80.39%), Postives = 92/102 (90.20%), Query Frame = 3

Query:   54 RPESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            + E+ RIR+KY DRIPVI EK E+SDI  IDKKKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV  +LPPTAA+MS+IYEE+KDEDGFLY+TYSGENTFG
Sbjct:   15 KAEAERIRQKYADRIPVICEKVEKSDIATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116

HSP 2 Score: 23.8682 bits (50), Expect = 9.464e-43
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 2

Query:   14 KSSFKLEHPLERRQA 58
            +S FK EHP E+R+A
Sbjct:    2 RSKFKDEHPFEKRKA 16

BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: ATG8_ASPNC (Autophagy-related protein 8 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=atg8 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 9.464e-43
Identity = 82/102 (80.39%), Postives = 92/102 (90.20%), Query Frame = 3

Query:   54 RPESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            + E+ RIR+KY DRIPVI EK E+SDI  IDKKKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV  +LPPTAA+MS+IYEE+KDEDGFLY+TYSGENTFG
Sbjct:   15 KAEAERIRQKYADRIPVICEKVEKSDIATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116

HSP 2 Score: 23.8682 bits (50), Expect = 9.464e-43
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 2

Query:   14 KSSFKLEHPLERRQA 58
            +S FK EHP E+R+A
Sbjct:    2 RSKFKDEHPFEKRKA 16

BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: ATG8_ASPFU (Autophagy-related protein 8 OS=Aspergillus fumigatus GN=atg8 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 9.464e-43
Identity = 82/102 (80.39%), Postives = 92/102 (90.20%), Query Frame = 3

Query:   54 RPESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            + E+ RIR+KY DRIPVI EK E+SDI  IDKKKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV  +LPPTAA+MS+IYEE+KDEDGFLY+TYSGENTFG
Sbjct:   15 KAEAERIRQKYADRIPVICEKVEKSDIATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116

HSP 2 Score: 23.8682 bits (50), Expect = 9.464e-43
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 2

Query:   14 KSSFKLEHPLERRQA 58
            +S FK EHP E+R+A
Sbjct:    2 RSKFKDEHPFEKRKA 16

BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: ATG8_ASPCL (Autophagy-related protein 8 OS=Aspergillus clavatus GN=atg8 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 9.464e-43
Identity = 82/102 (80.39%), Postives = 92/102 (90.20%), Query Frame = 3

Query:   54 RPESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            + E+ RIR+KY DRIPVI EK E+SDI  IDKKKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV  +LPPTAA+MS+IYEE+KDEDGFLY+TYSGENTFG
Sbjct:   15 KAEAERIRQKYADRIPVICEKVEKSDIATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116

HSP 2 Score: 23.8682 bits (50), Expect = 9.464e-43
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 2

Query:   14 KSSFKLEHPLERRQA 58
            +S FK EHP E+R+A
Sbjct:    2 RSKFKDEHPFEKRKA 16

BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: ATG8_PHANO (Autophagy-related protein 8 OS=Phaeosphaeria nodorum GN=ATG8 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.233e-42
Identity = 82/102 (80.39%), Postives = 92/102 (90.20%), Query Frame = 3

Query:   54 RPESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            + E+ RIR+KY DRIPVI EK E+SDI  IDKKKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV  +LPPTAA+MS+IYEE+KDEDGFLY+TYSGENTFG
Sbjct:   15 KAEAERIRQKYNDRIPVICEKVEKSDIATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116

HSP 2 Score: 23.8682 bits (50), Expect = 1.233e-42
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 2

Query:   14 KSSFKLEHPLERRQA 58
            +S FK EHP E+R+A
Sbjct:    2 RSKFKDEHPFEKRKA 16

BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: ATG8_CHAGB (Autophagy-related protein 8 OS=Chaetomium globosum GN=ATG8 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.093e-42
Identity = 81/102 (79.41%), Postives = 92/102 (90.20%), Query Frame = 3

Query:   54 RPESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            + E+ RIR+KY DRIPVI EK E+SDI  IDKKKYLVP+DLTVGQFVYV+RKRIKLS EKAIFIFV  +LPPTAA+MS+IYEE+KDEDGFLY+TYSGENTFG
Sbjct:   15 KAEAERIRQKYADRIPVICEKVEKSDIATIDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116

HSP 2 Score: 23.8682 bits (50), Expect = 2.093e-42
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 2

Query:   14 KSSFKLEHPLERRQA 58
            +S FK EHP E+R+A
Sbjct:    2 RSKFKDEHPFEKRKA 16

BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: ATG8_EMENI (Autophagy-related protein 8 OS=Emericella nidulans GN=atg8 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.094e-42
Identity = 82/102 (80.39%), Postives = 91/102 (89.22%), Query Frame = 3

Query:   54 RPESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            + E+ RIR KY DRIPVI EK E+SDI  IDKKKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV  +LPPTAA+MS+IYEE+KDEDGFLY+TYSGENTFG
Sbjct:   15 KAEAERIRAKYADRIPVICEKVEKSDIATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116

HSP 2 Score: 23.8682 bits (50), Expect = 2.094e-42
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 2

Query:   14 KSSFKLEHPLERRQA 58
            +S FK EHP E+R+A
Sbjct:    2 RSKFKDEHPFEKRKA 16

BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: ATG8_COCIM (Autophagy-related protein 8 OS=Coccidioides immitis GN=ATG8 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.095e-42
Identity = 81/102 (79.41%), Postives = 92/102 (90.20%), Query Frame = 3

Query:   54 RPESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            + E+ RIR+KY DRIPVI EK E+SDI  IDKKKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV  +LPPTAA+MS+IYEE+KD+DGFLY+TYSGENTFG
Sbjct:   15 KAEAERIRQKYADRIPVICEKVEKSDIATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDDDGFLYITYSGENTFG 116

HSP 2 Score: 23.8682 bits (50), Expect = 2.095e-42
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 2

Query:   14 KSSFKLEHPLERRQA 58
            +S FK EHP E+R+A
Sbjct:    2 RSKFKDEHPFEKRKA 16

The following BLAST results are available for this feature:

BLAST of CF504529 vs. ExPASy Swiss-Prot

BLAST of CF504529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83


Match Name	E-value	Identity	Description
ATG8_NEOFI	9.464e-43	80.39	Autophagy-related protein 8 OS=Neosartorya fischer...	[more]
ATG8_ASPTN	9.464e-43	80.39	Autophagy-related protein 8 OS=Aspergillus terreus...	[more]
ATG8_ASPOR	9.464e-43	80.39	Autophagy-related protein 8 OS=Aspergillus oryzae ...	[more]
ATG8_ASPNC	9.464e-43	80.39	Autophagy-related protein 8 OS=Aspergillus niger (...	[more]
ATG8_ASPFU	9.464e-43	80.39	Autophagy-related protein 8 OS=Aspergillus fumigat...	[more]
ATG8_ASPCL	9.464e-43	80.39	Autophagy-related protein 8 OS=Aspergillus clavatu...	[more]
ATG8_PHANO	1.233e-42	80.39	Autophagy-related protein 8 OS=Phaeosphaeria nodor...	[more]
ATG8_CHAGB	2.093e-42	79.41	Autophagy-related protein 8 OS=Chaetomium globosum...	[more]
ATG8_EMENI	2.094e-42	80.39	Autophagy-related protein 8 OS=Emericella nidulans...	[more]
ATG8_COCIM	2.095e-42	79.41	Autophagy-related protein 8 OS=Coccidioides immiti...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_120000-018 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_D02 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504529 ID=CF504529; Name=CF504529; organism=Citrus sinensis; type=EST; length=473bp
AGAAGCTATGGCCAAGAGCTCCTTCAAGCTTGAACACCCACTCGAAAGGA
GGCAGGCCTGAATCTGCCCGTATCAGGGAGAAGTATCCTGATAGAATACC
AGTGATTGTGGAGAAGGCTGAAAGGAGTGACATACCTGATATTGACAAAA
AAAAATACCTGGTTCCTGCTGATCTGACTGTTGGACAATTTGTTTATGTG
GTCCGGAAGAGGATAAAGCTCAGTGCTGAGAAGGCCATATTCATATTTGT
CAAGAACATTTTGCCACCCACTGCTGCAATGATGTCTGCAATTTATGAGG
AAAACAAAGATGAGGATGGCTTCCTTTACATGACTTACAGTGGGGAGAAC
ACATTCGGGGCATCTTTCTAAGGGAATCAACTGAACTTCTGTAGATTAAC
TCTGAAAAGACTTGATGGAAATATGTAAATCCTTTGCTATTTGCTTTCAA
CTGAGGGAGCACTTGGAAAGCAT