CF504529

Overview
NameCF504529
Unique NameCF504529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: GBRL2_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Mus musculus GN=Gabarapl2 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 4.380e-33
Identity = 64/100 (64.00%), Postives = 82/100 (82.00%), Query Frame = 3
Query:   60 ESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            ESA+IR KYPDR+PVIVEK   S I DIDK+KYLVP+D+TV QF++++RKRI+L +EKAIF+FV   +P ++  M  +YE+ KDEDGFLY+ YSGENTFG
Sbjct:   17 ESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: GBRL2_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Homo sapiens GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 4.380e-33
Identity = 64/100 (64.00%), Postives = 82/100 (82.00%), Query Frame = 3
Query:   60 ESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            ESA+IR KYPDR+PVIVEK   S I DIDK+KYLVP+D+TV QF++++RKRI+L +EKAIF+FV   +P ++  M  +YE+ KDEDGFLY+ YSGENTFG
Sbjct:   17 ESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: GBRL2_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Bos taurus GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 4.380e-33
Identity = 64/100 (64.00%), Postives = 82/100 (82.00%), Query Frame = 3
Query:   60 ESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            ESA+IR KYPDR+PVIVEK   S I DIDK+KYLVP+D+TV QF++++RKRI+L +EKAIF+FV   +P ++  M  +YE+ KDEDGFLY+ YSGENTFG
Sbjct:   17 ESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: GBRL1_PONAB (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Pongo abelii GN=GABARAPL1 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 8.259e-32
Identity = 59/102 (57.84%), Postives = 82/102 (80.39%), Query Frame = 3
Query:   54 RPESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            + E  +IR+KYPDR+PVIVEKA ++ +PD+DK+KYLVP+DLTVGQF +++RKRI L  E A+F FV N +PPT+A M  +YE+N++ED FLY+ YS E+ +G
Sbjct:   15 KKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNREEDYFLYVAYSDESVYG 116          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: GBRAP_RAT (Gamma-aminobutyric acid receptor-associated protein OS=Rattus norvegicus GN=Gabarap PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.079e-31
Identity = 61/102 (59.80%), Postives = 82/102 (80.39%), Query Frame = 3
Query:   54 RPESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            R E  +IR+KYPDR+PVIVEKA ++ I D+DKKKYLVP+DLTVGQF +++RKRI L AE A+F FV N++PPT+A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:   15 RSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: GBRAP_RABIT (Gamma-aminobutyric acid receptor-associated protein OS=Oryctolagus cuniculus GN=GABARAP PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.079e-31
Identity = 61/102 (59.80%), Postives = 82/102 (80.39%), Query Frame = 3
Query:   54 RPESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            R E  +IR+KYPDR+PVIVEKA ++ I D+DKKKYLVP+DLTVGQF +++RKRI L AE A+F FV N++PPT+A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:   15 RSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: GBRAP_MOUSE (Gamma-aminobutyric acid receptor-associated protein OS=Mus musculus GN=Gabarap PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.079e-31
Identity = 61/102 (59.80%), Postives = 82/102 (80.39%), Query Frame = 3
Query:   54 RPESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            R E  +IR+KYPDR+PVIVEKA ++ I D+DKKKYLVP+DLTVGQF +++RKRI L AE A+F FV N++PPT+A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:   15 RSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: GBRAP_HUMAN (Gamma-aminobutyric acid receptor-associated protein OS=Homo sapiens GN=GABARAP PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.079e-31
Identity = 61/102 (59.80%), Postives = 82/102 (80.39%), Query Frame = 3
Query:   54 RPESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            R E  +IR+KYPDR+PVIVEKA ++ I D+DKKKYLVP+DLTVGQF +++RKRI L AE A+F FV N++PPT+A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:   15 RSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: GBRAP_BOVIN (Gamma-aminobutyric acid receptor-associated protein OS=Bos taurus GN=GABARAP PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.079e-31
Identity = 61/102 (59.80%), Postives = 82/102 (80.39%), Query Frame = 3
Query:   54 RPESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            R E  +IR+KYPDR+PVIVEKA ++ I D+DKKKYLVP+DLTVGQF +++RKRI L AE A+F FV N++PPT+A M  +Y+E+ +ED FLY+ YS E+ +G
Sbjct:   15 RSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: GBRL1_XENTR (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus tropicalis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.840e-31
Identity = 59/102 (57.84%), Postives = 81/102 (79.41%), Query Frame = 3
Query:   54 RPESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            + E  +IR+KYPDR+PVIVEKA ++ +PD+DK+KYLVP+DLTVGQF +++RKRI L  E A+F FV N +PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:   15 KKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
The following BLAST results are available for this feature:
BLAST of CF504529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GBRL2_MOUSE4.380e-3364.00Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_HUMAN4.380e-3364.00Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_BOVIN4.380e-3364.00Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_PONAB8.259e-3257.84Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RAT1.079e-3159.80Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RABIT1.079e-3159.80Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_MOUSE1.079e-3159.80Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_HUMAN1.079e-3159.80Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_BOVIN1.079e-3159.80Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_XENTR1.840e-3157.84Gamma-aminobutyric acid receptor-associated protei... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-018 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504529 ID=CF504529; Name=CF504529; organism=Citrus sinensis; type=EST; length=473bp
AGAAGCTATGGCCAAGAGCTCCTTCAAGCTTGAACACCCACTCGAAAGGA
GGCAGGCCTGAATCTGCCCGTATCAGGGAGAAGTATCCTGATAGAATACC
AGTGATTGTGGAGAAGGCTGAAAGGAGTGACATACCTGATATTGACAAAA
AAAAATACCTGGTTCCTGCTGATCTGACTGTTGGACAATTTGTTTATGTG
GTCCGGAAGAGGATAAAGCTCAGTGCTGAGAAGGCCATATTCATATTTGT
CAAGAACATTTTGCCACCCACTGCTGCAATGATGTCTGCAATTTATGAGG
AAAACAAAGATGAGGATGGCTTCCTTTACATGACTTACAGTGGGGAGAAC
ACATTCGGGGCATCTTTCTAAGGGAATCAACTGAACTTCTGTAGATTAAC
TCTGAAAAGACTTGATGGAAATATGTAAATCCTTTGCTATTTGCTTTCAA
CTGAGGGAGCACTTGGAAAGCAT
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