CF504529

Overview
NameCF504529
Unique NameCF504529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: GBRL1_XENLA (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus laevis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.840e-31
Identity = 59/102 (57.84%), Postives = 81/102 (79.41%), Query Frame = 3
Query:   54 RPESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            + E  +IR+KYPDR+PVIVEKA ++ +PD+DK+KYLVP+DLTVGQF +++RKRI L  E A+F FV N +PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:   15 KKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: GBRL1_RAT (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Rattus norvegicus GN=Gabarapl1 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.840e-31
Identity = 59/102 (57.84%), Postives = 81/102 (79.41%), Query Frame = 3
Query:   54 RPESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            + E  +IR+KYPDR+PVIVEKA ++ +PD+DK+KYLVP+DLTVGQF +++RKRI L  E A+F FV N +PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:   15 KKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: GBRL1_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Mus musculus GN=Gabarapl1 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.840e-31
Identity = 59/102 (57.84%), Postives = 81/102 (79.41%), Query Frame = 3
Query:   54 RPESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            + E  +IR+KYPDR+PVIVEKA ++ +PD+DK+KYLVP+DLTVGQF +++RKRI L  E A+F FV N +PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:   15 KKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: GBRL1_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Homo sapiens GN=GABARAPL1 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.840e-31
Identity = 59/102 (57.84%), Postives = 81/102 (79.41%), Query Frame = 3
Query:   54 RPESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            + E  +IR+KYPDR+PVIVEKA ++ +PD+DK+KYLVP+DLTVGQF +++RKRI L  E A+F FV N +PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:   15 KKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: GBRL1_CAVPO (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Cavia porcellus GN=GABARAPL1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.840e-31
Identity = 59/102 (57.84%), Postives = 81/102 (79.41%), Query Frame = 3
Query:   54 RPESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            + E  +IR+KYPDR+PVIVEKA ++ +PD+DK+KYLVP+DLTVGQF +++RKRI L  E A+F FV N +PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:   15 KKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: GBRL1_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Bos taurus GN=GABARAPL1 PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.840e-31
Identity = 59/102 (57.84%), Postives = 81/102 (79.41%), Query Frame = 3
Query:   54 RPESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            + E  +IR+KYPDR+PVIVEKA ++ +PD+DK+KYLVP+DLTVGQF +++RKRI L  E A+F FV N +PPT+A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:   15 KKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: LGG1_CAEEL (Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.249e-29
Identity = 58/102 (56.86%), Postives = 78/102 (76.47%), Query Frame = 3
Query:   54 RPESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            R E  +IR KYPDRIPVIVEKA +S + D+DKKKYLVP+DLTVGQF +++RKRI+L  E A+F FV N++P T   M  +Y+++ +ED FLY+ YS E+ +G
Sbjct:   15 RAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQFYFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: GBRL3_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 3 OS=Homo sapiens GN=GABARAPL3 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.938e-29
Identity = 55/102 (53.92%), Postives = 79/102 (77.45%), Query Frame = 3
Query:   54 RPESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            + E  +IR+KYPDR+P+IVEKA ++ +PD+D++KYLVP+DLT GQF  ++RKRI L  E A+F FV N +PPT+A M  +YE++ +ED FLY+ YS E+ +G
Sbjct:   15 KKEGEKIRKKYPDRVPLIVEKAPKARVPDLDRRKYLVPSDLTDGQFYLLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDSHEEDDFLYVAYSNESVYG 116          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: ATG8I_ARATH (Autophagy-related protein 8i OS=Arabidopsis thaliana GN=ATG8I PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 6.544e-29
Identity = 58/100 (58.00%), Postives = 76/100 (76.00%), Query Frame = 3
Query:   60 ESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            ES  I  KYP RIPVI EK  ++D+P I+KKK+LVP D++VGQF+Y++  R+ LS  KA+F+FV N LP TAA+M ++YE  KD+DGF+YM YS E TFG
Sbjct:   16 ESREIIAKYPTRIPVIAEKYCKTDLPAIEKKKFLVPRDMSVGQFIYILSARLHLSPGKALFVFVNNTLPQTAALMDSVYESYKDDDGFVYMCYSSEKTFG 115          
BLAST of CF504529 vs. ExPASy Swiss-Prot
Match: ATG8H_ARATH (Autophagy-related protein 8h OS=Arabidopsis thaliana GN=ATG8H PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.458e-28
Identity = 57/100 (57.00%), Postives = 75/100 (75.00%), Query Frame = 3
Query:   60 ESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 359
            ES  I  KYPDRIPVI+EK   +D+PD++K KYLVP D+TVG F++++ KR++L   KA+F+FV N LP TA+ M ++Y   K+EDGFLYM YS E TFG
Sbjct:   20 ESNNIIAKYPDRIPVIIEKYSNADLPDMEKNKYLVPRDMTVGHFIHMLSKRMQLDPSKALFVFVHNTLPQTASRMDSLYNTFKEEDGFLYMCYSTEKTFG 119          
The following BLAST results are available for this feature:
BLAST of CF504529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GBRL1_XENLA1.840e-3157.84Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_RAT1.840e-3157.84Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_MOUSE1.840e-3157.84Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_HUMAN1.840e-3157.84Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_CAVPO1.840e-3157.84Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_BOVIN1.840e-3157.84Gamma-aminobutyric acid receptor-associated protei... [more]
LGG1_CAEEL2.249e-2956.86Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 P... [more]
GBRL3_HUMAN2.938e-2953.92Gamma-aminobutyric acid receptor-associated protei... [more]
ATG8I_ARATH6.544e-2958.00Autophagy-related protein 8i OS=Arabidopsis thalia... [more]
ATG8H_ARATH1.458e-2857.00Autophagy-related protein 8h OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-018 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504529 ID=CF504529; Name=CF504529; organism=Citrus sinensis; type=EST; length=473bp
AGAAGCTATGGCCAAGAGCTCCTTCAAGCTTGAACACCCACTCGAAAGGA
GGCAGGCCTGAATCTGCCCGTATCAGGGAGAAGTATCCTGATAGAATACC
AGTGATTGTGGAGAAGGCTGAAAGGAGTGACATACCTGATATTGACAAAA
AAAAATACCTGGTTCCTGCTGATCTGACTGTTGGACAATTTGTTTATGTG
GTCCGGAAGAGGATAAAGCTCAGTGCTGAGAAGGCCATATTCATATTTGT
CAAGAACATTTTGCCACCCACTGCTGCAATGATGTCTGCAATTTATGAGG
AAAACAAAGATGAGGATGGCTTCCTTTACATGACTTACAGTGGGGAGAAC
ACATTCGGGGCATCTTTCTAAGGGAATCAACTGAACTTCTGTAGATTAAC
TCTGAAAAGACTTGATGGAAATATGTAAATCCTTTGCTATTTGCTTTCAA
CTGAGGGAGCACTTGGAAAGCAT
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