CF504597

Overview
NameCF504597
Unique NameCF504597
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length344
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504597 vs. ExPASy Swiss-Prot
Match: HMDH2_SOLTU (3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 OS=Solanum tuberosum GN=HMG2 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.024e-44
Identity = 84/112 (75.00%), Postives = 99/112 (88.39%), Query Frame = 1
Query:    7 GLQVSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLKFTCSTGDAMGMNM 342
            G + SVPMATTEGCLVAS NRGCKAI+ SGGAT ++L+DGMTRAP VRFG+AKRAAELK F+E+P+ F+ L+ VFN+SSRF RLQ I+CAIAGKNLY++F CSTGDAMGMNM
Sbjct:  267 GKEFSVPMATTEGCLVASTNRGCKAIYASGGATCIVLRDGMTRAPCVRFGTAKRAAELKFFVEDPIKFETLANVFNQSSRFGRLQRIQCAIAGKNLYMRFVCSTGDAMGMNM 378          
BLAST of CF504597 vs. ExPASy Swiss-Prot
Match: HMDH2_SOLLC (3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 OS=Solanum lycopersicum GN=HMG2 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.024e-44
Identity = 85/112 (75.89%), Postives = 99/112 (88.39%), Query Frame = 1
Query:    7 GLQVSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLKFTCSTGDAMGMNM 342
            G + SVPMATTEGCLVAS NRGCKAI+ SGGAT +LL+DGMTRAP VRFG+AKRAAELK F+E+P+ F+ L+ VFN+SSRFARLQ I+CAIAGKNLY++  CSTGDAMGMNM
Sbjct:  270 GKEFSVPMATTEGCLVASTNRGCKAIYASGGATCILLRDGMTRAPCVRFGTAKRAAELKFFVEDPIKFESLANVFNQSSRFARLQRIQCAIAGKNLYMRLCCSTGDAMGMNM 381          
BLAST of CF504597 vs. ExPASy Swiss-Prot
Match: HMDH_CATRO (3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Catharanthus roseus GN=HMGR PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.746e-44
Identity = 84/112 (75.00%), Postives = 101/112 (90.18%), Query Frame = 1
Query:    7 GLQVSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLKFTCSTGDAMGMNM 342
            G +  +PMATTEGCLVAS NRGCKAI  SGGA SVLL+DGMTRAPVVRFG+AKRAAELK ++E+  NF+ +S+VFNKSSRFA+LQ+++CAIAGKNLY++F+CSTGDAMGMNM
Sbjct:  262 GREYMLPMATTEGCLVASTNRGCKAILASGGANSVLLRDGMTRAPVVRFGTAKRAAELKFYMEDTQNFETISVVFNKSSRFAKLQSVQCAIAGKNLYIRFSCSTGDAMGMNM 373          
BLAST of CF504597 vs. ExPASy Swiss-Prot
Match: HMDH_MAIZE (3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Zea mays GN=HMGR PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.930e-43
Identity = 83/112 (74.11%), Postives = 99/112 (88.39%), Query Frame = 1
Query:    7 GLQVSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLKFTCSTGDAMGMNM 342
            G +  +PMATTEGCLVAS NRGCKAI  SGGATSV+L+D MTRAPV RF +A+RAAELK FLE+P NFD LS+VFN+SSRFARLQ ++CA+AG+NLY++F+CSTGDAMGMNM
Sbjct:  236 GRRFYLPMATTEGCLVASTNRGCKAIAESGGATSVVLRDAMTRAPVARFPTARRAAELKAFLEDPANFDTLSVVFNRSSRFARLQGVQCAMAGRNLYMRFSCSTGDAMGMNM 347          
BLAST of CF504597 vs. ExPASy Swiss-Prot
Match: HMDH2_ARATH (3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 OS=Arabidopsis thaliana GN=HMG2 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.640e-42
Identity = 83/112 (74.11%), Postives = 97/112 (86.61%), Query Frame = 1
Query:    7 GLQVSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLKFTCSTGDAMGMNM 342
            G++ SVPMATTEGCLVAS NRG KAIHLSGGA SVL+KD MTRAPVVRF SA+RAA +  +L++P NF+ LS++FNKSSRFARLQ+I C IAG+NLY +F CSTGDAMGMNM
Sbjct:  229 GVEYSVPMATTEGCLVASTNRGFKAIHLSGGAFSVLVKDAMTRAPVVRFPSARRAALVMFYLQDPSNFERLSLIFNKSSRFARLQSITCTIAGRNLYPRFACSTGDAMGMNM 340          
BLAST of CF504597 vs. ExPASy Swiss-Prot
Match: HMDH3_ORYSJ (3-hydroxy-3-methylglutaryl-coenzyme A reductase 3 OS=Oryza sativa subsp. japonica GN=HMG3 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 4.755e-42
Identity = 82/112 (73.21%), Postives = 97/112 (86.61%), Query Frame = 1
Query:    7 GLQVSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLKFTCSTGDAMGMNM 342
            G +  VPMATTEGCLVAS NRGCKAI  SGGA SV+L+DGMTRAPV R  +A+RAAELK FLE+ VNF+ LSMVFN+SSRFARLQ ++CA+AG+NLY++F+C TGDAMGMNM
Sbjct:  229 GQRFYVPMATTEGCLVASTNRGCKAIAESGGAVSVVLRDGMTRAPVARLPTARRAAELKAFLEDSVNFNTLSMVFNRSSRFARLQGVQCAMAGRNLYMRFSCCTGDAMGMNM 340          
BLAST of CF504597 vs. ExPASy Swiss-Prot
Match: HMDH1_ORYSJ (3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Oryza sativa subsp. japonica GN=HMG1 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 8.393e-39
Identity = 77/112 (68.75%), Postives = 91/112 (81.25%), Query Frame = 1
Query:    7 GLQVSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLKFTCSTGDAMGMNM 342
            G +  VPMATTEGCLVAS NRGC+AI  SGGA SVLL+D M+RAP V+  SA RAAELK F E P NF+ L+ VFN+SSRF RLQ I+CA+AG+NLY++F+C TGDAMGMNM
Sbjct:  200 GREYHVPMATTEGCLVASVNRGCRAISASGGAFSVLLRDAMSRAPAVKLPSAMRAAELKAFAEAPANFELLAAVFNRSSRFGRLQDIRCALAGRNLYMRFSCITGDAMGMNM 311          
BLAST of CF504597 vs. ExPASy Swiss-Prot
Match: HMDH1_ORYSI (3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Oryza sativa subsp. indica GN=HMG1 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 8.393e-39
Identity = 77/112 (68.75%), Postives = 91/112 (81.25%), Query Frame = 1
Query:    7 GLQVSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLKFTCSTGDAMGMNM 342
            G +  VPMATTEGCLVAS NRGC+AI  SGGA SVLL+D M+RAP V+  SA RAAELK F E P NF+ L+ VFN+SSRF RLQ I+CA+AG+NLY++F+C TGDAMGMNM
Sbjct:  207 GREYHVPMATTEGCLVASVNRGCRAISASGGAFSVLLRDAMSRAPAVKLPSAMRAAELKAFAEAPANFELLAAVFNRSSRFGRLQDIRCALAGRNLYMRFSCITGDAMGMNM 318          
BLAST of CF504597 vs. ExPASy Swiss-Prot
Match: HMDH2_DICDI (3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 OS=Dictyostelium discoideum GN=hmgB PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 2.615e-32
Identity = 71/112 (63.39%), Postives = 86/112 (76.79%), Query Frame = 1
Query:    7 GLQVSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLKFTCSTGDAMGMNM 342
            G  VS+PMATTEGCLVAS +RG KAI  SGGA +VLL+ GMTRAPV R  S+ RA ELK ++EN  NF  ++  FN +SRFARL++IK  IAG+ +YL+F  STGDAMGMNM
Sbjct:  182 GKLVSIPMATTEGCLVASTHRGAKAITKSGGAKTVLLQSGMTRAPVCRLPSSIRAGELKQWIENQENFYQVASAFNSTSRFARLKSIKVVIAGRLVYLRFKSSTGDAMGMNM 293          
BLAST of CF504597 vs. ExPASy Swiss-Prot
Match: HMDH1_DICDI (3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Dictyostelium discoideum GN=hmgA PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.298e-31
Identity = 65/112 (58.04%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    7 GLQVSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLKFTCSTGDAMGMNM 342
            G  V++PMATTEGCLVAS +RGCKAI  SGGA   +   GMTRAPVVRF    +A+E   ++ +  N+  L  VF+ +SRFARL AIKC IAG+++Y++F C TGDAMGMNM
Sbjct:  226 GQLVTIPMATTEGCLVASTHRGCKAITESGGAKCTITSRGMTRAPVVRFSDIVKASEFVSWINDTDNYQALKAVFDSTSRFARLSAIKCTIAGRSVYIRFKCDTGDAMGMNM 337          
The following BLAST results are available for this feature:
BLAST of CF504597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
HMDH2_SOLTU1.024e-4475.003-hydroxy-3-methylglutaryl-coenzyme A reductase 2 ... [more]
HMDH2_SOLLC1.024e-4475.893-hydroxy-3-methylglutaryl-coenzyme A reductase 2 ... [more]
HMDH_CATRO1.746e-4475.003-hydroxy-3-methylglutaryl-coenzyme A reductase OS... [more]
HMDH_MAIZE1.930e-4374.113-hydroxy-3-methylglutaryl-coenzyme A reductase OS... [more]
HMDH2_ARATH3.640e-4274.113-hydroxy-3-methylglutaryl-coenzyme A reductase 2 ... [more]
HMDH3_ORYSJ4.755e-4273.213-hydroxy-3-methylglutaryl-coenzyme A reductase 3 ... [more]
HMDH1_ORYSJ8.393e-3968.753-hydroxy-3-methylglutaryl-coenzyme A reductase 1 ... [more]
HMDH1_ORYSI8.393e-3968.753-hydroxy-3-methylglutaryl-coenzyme A reductase 1 ... [more]
HMDH2_DICDI2.615e-3263.393-hydroxy-3-methylglutaryl-coenzyme A reductase 2 ... [more]
HMDH1_DICDI1.298e-3158.043-hydroxy-3-methylglutaryl-coenzyme A reductase 1 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-086 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504597 ID=CF504597; Name=CF504597; organism=Citrus sinensis; type=EST; length=344bp
TCCCCCGGGCTGCAGGTTTCGGTTCCCATGGCCACCACCGAAGGGTGCTT
GGTGGCGAGTGCGAACAGGGGTTGTAAAGCTATTCATTTGTCCGGTGGAG
CTACGAGTGTTTTGTTGAAAGATGGGATGACCAGAGCTCCCGTTGTTAGG
TTCGGGAGTGCTAAGAGGGCTGCTGAGTTGAAGTTGTTCCTGGAGAATCC
TGTCAATTTCGATCCTTTGTCTATGGTTTTCAATAAATCTAGCAGATTTG
CTAGACTTCAGGCCATCAAATGTGCTATTGCTGGCAAAAATCTCTACCTC
AAATTTACTTGCAGCACCGGTGATGCTATGGGAATGAATATGGT
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