CF504597

Overview
NameCF504597
Unique NameCF504597
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length344
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504597 vs. ExPASy Swiss-Prot
Match: HMDH_MOUSE (3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Mus musculus GN=Hmgcr PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 6.441e-31
Identity = 66/112 (58.93%), Postives = 81/112 (72.32%), Query Frame = 1
Query:    7 GLQVSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLKFTCSTGDAMGMNM 342
            G +  VPMATTEGCLVAS NRGC+AI L GGA+S +L DGMTR PVVR   A  +AE+K +LE P  F  +   F+ +SRFARLQ +   +AG+NLY++F   TGDAMGMNM
Sbjct:  547 GKEYQVPMATTEGCLVASTNRGCRAISLGGGASSRVLADGMTRGPVVRLPRACDSAEVKTWLETPEGFAVIKEAFDSTSRFARLQKLHVTMAGRNLYIRFQSRTGDAMGMNM 658          
BLAST of CF504597 vs. ExPASy Swiss-Prot
Match: HMDH_RABIT (3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Oryctolagus cuniculus GN=HMGCR PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.412e-31
Identity = 66/112 (58.93%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    7 GLQVSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLKFTCSTGDAMGMNM 342
            G +  VPMATTEGCLVAS NRGC+AI L GGA+S +L DGMTR PVVR   A  +AE+K +LE P  F  +   F+ +SRFARLQ +  ++AG+NLY++F   TGDAMGMNM
Sbjct:  548 GKEFQVPMATTEGCLVASTNRGCRAICLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETPEGFAVIKEAFDSTSRFARLQKLHISMAGRNLYIRFQSRTGDAMGMNM 659          
BLAST of CF504597 vs. ExPASy Swiss-Prot
Match: HMDH_MESAU (3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Mesocricetus auratus GN=HMGCR PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.412e-31
Identity = 66/112 (58.93%), Postives = 81/112 (72.32%), Query Frame = 1
Query:    7 GLQVSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLKFTCSTGDAMGMNM 342
            G +  VPMATTEGCLVAS NRGC+AI L GGA+S +L DGMTR PVVR   A  +AE+K +LE P  F  +   F+ +SRFARLQ +   +AG+NLY++F   TGDAMGMNM
Sbjct:  547 GKEYQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETPEGFAVIKDAFDSTSRFARLQKLHVTMAGRNLYIRFQSKTGDAMGMNM 658          
BLAST of CF504597 vs. ExPASy Swiss-Prot
Match: HMDH_CRIGR (3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Cricetulus griseus GN=HMGCR PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.412e-31
Identity = 66/112 (58.93%), Postives = 81/112 (72.32%), Query Frame = 1
Query:    7 GLQVSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLKFTCSTGDAMGMNM 342
            G +  VPMATTEGCLVAS NRGC+AI L GGA+S +L DGMTR PVVR   A  +AE+K +LE P  F  +   F+ +SRFARLQ +   +AG+NLY++F   TGDAMGMNM
Sbjct:  547 GKEYQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETPEGFAVIKDAFDSTSRFARLQKLHVTMAGRNLYIRFQSKTGDAMGMNM 658          
BLAST of CF504597 vs. ExPASy Swiss-Prot
Match: HMDH_PICJA (3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Pichia jadinii GN=HMG PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.435e-30
Identity = 65/112 (58.04%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    7 GLQVSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLKFTCSTGDAMGMNM 342
            G    +PMATTEGCLVASA RGCKAI+L GG T+VL KDGMTR P V+F S KRA + KL+L++    + +   FN +SRFARLQ ++ A+AG  L+++F   TGDAMGMNM
Sbjct:  607 GKPYHIPMATTEGCLVASAMRGCKAINLGGGVTTVLTKDGMTRGPCVKFPSLKRAGQCKLWLDSDEGQEEMKKAFNSTSRFARLQHLQTALAGDLLFIRFRTVTGDAMGMNM 718          
BLAST of CF504597 vs. ExPASy Swiss-Prot
Match: HMDH1_YEAST (3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Saccharomyces cerevisiae GN=HMG1 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.448e-30
Identity = 64/112 (57.14%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    7 GLQVSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLKFTCSTGDAMGMNM 342
            G    +PMATTEGCLVASA RGCKAI+  GGAT+VL KDGMTR PVVRF + KR+   K++L++    + +   FN +SRFARLQ I+  +AG  L+++F  +TGDAMGMNM
Sbjct:  703 GTSYHIPMATTEGCLVASAMRGCKAINAGGGATTVLTKDGMTRGPVVRFPTLKRSGACKIWLDSEEGQNAIKKAFNSTSRFARLQHIQTCLAGDLLFMRFRTTTGDAMGMNM 814          
BLAST of CF504597 vs. ExPASy Swiss-Prot
Match: HMDH_ASPTN (3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ATEG_09965 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.453e-30
Identity = 65/112 (58.04%), Postives = 85/112 (75.89%), Query Frame = 1
Query:    7 GLQVSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLKFTCSTGDAMGMNM 342
            G  + +PMATTEG LVASA+RGCKAI+  GGAT++L  DGMTR P +RF SA+RAAE + ++E+P+  + L+  FN +SRFARLQ +  A AG  LY++F  +TGDAMGMNM
Sbjct:  718 GQALFIPMATTEGVLVASASRGCKAINAGGGATTMLKGDGMTRGPCLRFPSAQRAAEAQRWVESPLGHEVLAAAFNATSRFARLQTLTVAQAGIYLYIRFRTTTGDAMGMNM 829          
BLAST of CF504597 vs. ExPASy Swiss-Prot
Match: HMDH_ASPTE (3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Aspergillus terreus PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 5.453e-30
Identity = 65/112 (58.04%), Postives = 85/112 (75.89%), Query Frame = 1
Query:    7 GLQVSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLKFTCSTGDAMGMNM 342
            G  + +PMATTEG LVASA+RGCKAI+  GGAT++L  DGMTR P +RF SA+RAAE + ++E+P+  + L+  FN +SRFARLQ +  A AG  LY++F  +TGDAMGMNM
Sbjct:  718 GQALFIPMATTEGVLVASASRGCKAINAGGGATTMLKGDGMTRGPCLRFPSAQRAAEAQRWVESPLGHEVLAAAFNATSRFARLQTLTVAQAGIYLYIRFRTTTGDAMGMNM 829          
BLAST of CF504597 vs. ExPASy Swiss-Prot
Match: HMDH_RAT (3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Rattus norvegicus GN=Hmgcr PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 9.301e-30
Identity = 64/112 (57.14%), Postives = 80/112 (71.43%), Query Frame = 1
Query:    7 GLQVSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLKFTCSTGDAMGMNM 342
            G +  VPMATTEGCLVAS NRGC+AI L GGA+S +L DGM+R PVVR   A  +AE+K +LE P  F  +   F+ +SRFARLQ +   +AG+NLY++    TGDAMGMNM
Sbjct:  547 GKEYQVPMATTEGCLVASTNRGCRAISLGGGASSRVLADGMSRGPVVRLPRACDSAEVKSWLETPEGFAVVKEAFDSTSRFARLQKLHVTLAGRNLYIRLQSKTGDAMGMNM 658          
BLAST of CF504597 vs. ExPASy Swiss-Prot
Match: HMDH_GIBFU (3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Gibberella fujikuroi GN=HMGR PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.301e-30
Identity = 64/112 (57.14%), Postives = 81/112 (72.32%), Query Frame = 1
Query:    7 GLQVSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLKFTCSTGDAMGMNM 342
            G    +PMATTEG LVASA+RGCKAI+  GGA +VL  DGMTR P V F + +RA   KL+L++    D +   FN +SRFARLQ++K A+AG NLY++F  +TGDAMGMNM
Sbjct:  607 GQSYFIPMATTEGVLVASASRGCKAINSGGGAITVLTADGMTRGPCVAFETLERAGAAKLWLDSEAGQDMMKKAFNSTSRFARLQSMKTALAGTNLYIRFKTTTGDAMGMNM 718          
The following BLAST results are available for this feature:
BLAST of CF504597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
HMDH_MOUSE6.441e-3158.933-hydroxy-3-methylglutaryl-coenzyme A reductase OS... [more]
HMDH_RABIT8.412e-3158.933-hydroxy-3-methylglutaryl-coenzyme A reductase OS... [more]
HMDH_MESAU8.412e-3158.933-hydroxy-3-methylglutaryl-coenzyme A reductase OS... [more]
HMDH_CRIGR8.412e-3158.933-hydroxy-3-methylglutaryl-coenzyme A reductase OS... [more]
HMDH_PICJA1.435e-3058.043-hydroxy-3-methylglutaryl-coenzyme A reductase OS... [more]
HMDH1_YEAST2.448e-3057.143-hydroxy-3-methylglutaryl-coenzyme A reductase 1 ... [more]
HMDH_ASPTN5.453e-3058.043-hydroxy-3-methylglutaryl-coenzyme A reductase OS... [more]
HMDH_ASPTE5.453e-3058.043-hydroxy-3-methylglutaryl-coenzyme A reductase OS... [more]
HMDH_RAT9.301e-3057.143-hydroxy-3-methylglutaryl-coenzyme A reductase OS... [more]
HMDH_GIBFU9.301e-3057.143-hydroxy-3-methylglutaryl-coenzyme A reductase OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-086 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-1_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504597 ID=CF504597; Name=CF504597; organism=Citrus sinensis; type=EST; length=344bp
TCCCCCGGGCTGCAGGTTTCGGTTCCCATGGCCACCACCGAAGGGTGCTT
GGTGGCGAGTGCGAACAGGGGTTGTAAAGCTATTCATTTGTCCGGTGGAG
CTACGAGTGTTTTGTTGAAAGATGGGATGACCAGAGCTCCCGTTGTTAGG
TTCGGGAGTGCTAAGAGGGCTGCTGAGTTGAAGTTGTTCCTGGAGAATCC
TGTCAATTTCGATCCTTTGTCTATGGTTTTCAATAAATCTAGCAGATTTG
CTAGACTTCAGGCCATCAAATGTGCTATTGCTGGCAAAAATCTCTACCTC
AAATTTACTTGCAGCACCGGTGATGCTATGGGAATGAATATGGT
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