CF510024

Overview
NameCF510024
Unique NameCF510024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER2_APHSA (Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 4.647e-22
Identity = 55/88 (62.50%), Postives = 64/88 (72.73%), Query Frame = 1
Query:  187 MATYKVKLITPGGEEEINC----PDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTV-DQSEQSFLDDDQIGEGFVLTCAAYPT 435
            MATYKV LI    EE IN      DD  ILDA EEAGLDLP SCRAG+CS+C GK+VSG   +Q +Q+FLDDDQ+  G+V+TC AYPT
Sbjct:    1 MATYKVTLINE--EEGINAILEVADDQTILDAGEEAGLDLPSSCRAGSCSTCAGKLVSGAAPNQDDQAFLDDDQLAAGWVMTCVAYPT 86          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER2_PLEBO (Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 3.012e-21
Identity = 46/84 (54.76%), Postives = 63/84 (75.00%), Query Frame = 1
Query:  187 MATYKVKLITPGGEEEINCP--DDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            MATY+V+LI      +I  P  +D+ +L+AAEEA LDLP+SC +GACSSC GKVV G ++Q +Q+FLD++Q+ +GFVL C  YP
Sbjct:    1 MATYQVRLINKKRNLDITLPVDEDTTVLEAAEEAELDLPFSCHSGACSSCVGKVVEGEINQDDQTFLDEEQVAKGFVLLCVTYP 84          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FERH_ANAVT (Ferredoxin, heterocyst OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH1 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.710e-21
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 1
Query:  187 MATYKVKLITPGG--EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            MATY+V+LI+     +  I   +++ ILD AEE G++LP+SC +G+CSSC GKVV G VDQS+Q FLDD+Q+G+GF L C  YP
Sbjct:    1 MATYQVRLISKKENIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQVGKGFALLCVTYP 84          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FERH_ANASP (Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC 7120) GN=fdxH PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 3.330e-20
Identity = 45/84 (53.57%), Postives = 62/84 (73.81%), Query Frame = 1
Query:  187 MATYKVKLITPGGEEE--INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            MA+Y+V+LI    + +  I   +++ ILD AEE G++LP+SC +G+CSSC GKVV G VDQS+Q FLDD+Q+G+GF L C  YP
Sbjct:    1 MASYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYP 84          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FERH_FREDI (Ferredoxin, heterocyst OS=Fremyella diplosiphon GN=fdxH PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.819e-19
Identity = 44/84 (52.38%), Postives = 60/84 (71.43%), Query Frame = 1
Query:  187 MATYKVKLITPGGEEE--INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            MATY+V+LI    + +  I   +D+ IL+ A E G++LP+SC +G+CSSC GKVV G VDQS+Q FLDD+Q+ +GF L C  YP
Sbjct:    1 MATYQVRLINKKEDLDSTIEIDEDTTILEGAAENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMSKGFALLCVTYP 84          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FERV_ANAVT (Ferredoxin, vegetative OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH2 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 8.202e-19
Identity = 43/84 (51.19%), Postives = 61/84 (72.62%), Query Frame = 1
Query:  187 MATYKVKLITPGGEEEINCPDD--SFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            M TY+V+LI      +I  P D  + ILDAAE+  ++LP+SC++G+CSSC  KVV G VDQSEQ FLD++Q+ +GF++ C +YP
Sbjct:    1 MTTYQVRLINKKRAIDITIPVDENTTILDAAEQQDIELPFSCQSGSCSSCVAKVVEGEVDQSEQVFLDEEQMAKGFIVLCVSYP 84          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER2_EQUTE (Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 8.202e-19
Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 1
Query:  196 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            YKV L TP G+   +      ++D A E   DLP SC+AGACS+C GK+VSGTVDQSE SFLDD+QI +G+VLTC A P
Sbjct:    2 YKVTLKTPDGDITFDVEPGERLIDIASEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIP 79          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER2_EQUAR (Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.386e-18
Identity = 45/79 (56.96%), Postives = 55/79 (69.62%), Query Frame = 1
Query:  196 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            YKV L TP G+   +      ++D   E   DLP SC+AGACS+C GK+VSGTVDQSE SFLDD+QI +G+VLTC A P
Sbjct:    2 YKVTLKTPDGDITFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIP 79          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER2_SYNP6 (Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF2 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.355e-13
Identity = 32/82 (39.02%), Postives = 50/82 (60.98%), Query Frame = 1
Query:  187 MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            MATY+V++I  G  +      D  +LD+A+ AG+DLP SC  G C++C  +++SG VDQ +   +  +   +G+ L C AYP
Sbjct:    1 MATYQVEVIYQGQSQTFTADSDQSVLDSAQAAGVDLPASCLTGVCTTCAARILSGEVDQPDAMGVGPEPAKQGYTLLCVAYP 82          
The following BLAST results are available for this feature:
BLAST of CF510024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER2_APHSA4.647e-2262.50Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2[more]
FER2_PLEBO3.012e-2154.76Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 S... [more]
FERH_ANAVT6.710e-2154.76Ferredoxin, heterocyst OS=Anabaena variabilis (str... [more]
FERH_ANASP3.330e-2053.57Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC... [more]
FERH_FREDI2.819e-1952.38Ferredoxin, heterocyst OS=Fremyella diplosiphon GN... [more]
FERV_ANAVT8.202e-1951.19Ferredoxin, vegetative OS=Anabaena variabilis (str... [more]
FER2_EQUTE8.202e-1958.23Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1[more]
FER2_EQUAR2.386e-1856.96Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1[more]
FER2_SYNP61.355e-1339.02Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 271... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-539 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510024 ID=CF510024; Name=CF510024; organism=Citrus sinensis; type=EST; length=436bp
TCAAAACCAAAAACTCAACTGTCCCTTCCTTGAGCAAGAGCAGCAACAAT
GGCCACCCTCTCAAGCGCCATGGTCAGCACCTCATTCATCAGAAGCAAGC
CTACAGCGACCAGCCTCAAAGCCATGCCTAACATGGGTCAGGCTATATTT
GGCCTCAAAGCCAACAGAGGTGGCCGTGTTGTAGCCATGGCTACATACAA
AGTCAAGCTCATTACACCTGGGGGAGAGGAAGAAATCAACTGTCCTGATG
ACTCGTTTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTAC
TCATGCAGGGCTGGGGCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGG
AACCGTTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATTGGAG
AAGGTTTTGTTCTCACTTGTGCTGCTTATCCAACAA
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