CF510024

Overview
NameCF510024
Unique NameCF510024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.098e-47
Identity = 93/129 (72.09%), Postives = 109/129 (84.50%), Query Frame = 1
Query:   58 LSSAMVSTSFIRSKPTATSLKAMPNMG-QAIFGLKAN--RGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPT 435
            LSSA+V TSFIR  P   SL+++P+   Q++FGLK+   RGGRV AMATYKVK ITP GE E+ C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG+VDQS+QSFLDD+QIGEGFVLTCAAYPT
Sbjct:    6 LSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPT 134          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.028e-45
Identity = 88/129 (68.22%), Postives = 110/129 (85.27%), Query Frame = 1
Query:   58 LSSAMVSTSFIRSKPTATSLKAMPNMG-QAIFGLKAN--RGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPT 435
            LSSA+VSTSF+R + T  SL+++P    Q++FGLK++  RGGRV AMATYKVK ITP GE+E+ C +D ++LDAAEEAGLDLPYSCRAG+CSSC GKVVSG++DQS+QSFLDD+Q+ EG+VLTC AYPT
Sbjct:    6 LSSAIVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPT 134          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 5.102e-45
Identity = 82/128 (64.06%), Postives = 104/128 (81.25%), Query Frame = 1
Query:   49 MATLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            MA++S+ M+STSF+  KP  TSLK +PN+G+A+FGLK+  GG+V  MA+YKVKLITP G  E +CPD+ +ILD AEEAG DLPYSCRAG+CSSC GK+  G VDQ++ +FLDDDQ+ EG+VLTC AYP
Sbjct:    1 MASVSATMISTSFMPRKPAVTSLKPIPNVGEALFGLKSANGGKVTCMASYKVKLITPDGPIEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYP 128          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER1_SOLLC (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.137e-44
Identity = 83/128 (64.84%), Postives = 101/128 (78.91%), Query Frame = 1
Query:   49 MATLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            MA++S  M+STSF+  KP  TSLKA+ N+G+A+FGLK+ R GR+  MA+YKVKLITP G  E  CPDD +ILD AEE G DLPYSCRAG+CSSC GKV +G+VDQS+ +FLD+DQ   GFVLTC AYP
Sbjct:    1 MASISGTMISTSFLPRKPAVTSLKAISNVGEALFGLKSGRNGRITCMASYKVKLITPEGPIEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFVLTCVAYP 128          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 4.042e-42
Identity = 86/134 (64.18%), Postives = 106/134 (79.10%), Query Frame = 1
Query:   40 AATMATLSSAMVSTSFIRSKPTATSLKAMP-NMGQAIFGLKANRG-GRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPT 435
            AAT A LS A +ST+F    P  T+  A+P N+G+A+FGLK++   GRV AMA YKV L+TP G++E+ CPDD +ILDAAEEAG+DLPYSCRAG+CSSC GKV SG+V+Q + SFLDDDQI EG+VLTC AYPT
Sbjct:    2 AATTAALSGATMSTAFAPKTPPMTA--ALPTNVGRALFGLKSSASRGRVTAMAAYKVTLVTPEGKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKEGWVLTCVAYPT 133          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER_SILPR (Ferredoxin, chloroplastic OS=Silene pratensis GN=PETF PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 4.183e-39
Identity = 80/129 (62.02%), Postives = 96/129 (74.42%), Query Frame = 1
Query:   52 ATLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITP-GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPT 435
            +TLS+  VS S +  +    +     NMGQA+FGLKA   GRV AMATYKV LIT   G    +CPDD ++LD AEE G+DLPYSCRAG+CSSC GKVV+G+VDQS+QSFLDDDQI  G+VLTCAAYP+
Sbjct:    3 STLSTLSVSASLLPKQQPMVASSLPTNMGQALFGLKAGSRGRVTAMATYKVTLITKESGTVTFDCPDDVYVLDQAEEEGIDLPYSCRAGSCSSCAGKVVAGSVDQSDQSFLDDDQIEAGWVLTCAAYPS 131          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER1_PEA (Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PETF PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 4.625e-38
Identity = 78/133 (58.65%), Postives = 91/133 (68.42%), Query Frame = 1
Query:   43 ATMATLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKAN--RGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPT 435
            AT   L    VSTSF+R++P   S+           GLK +  RG   VAMA+YKVKL+TP G +E  CP D +ILD AEE G+DLPYSCRAG+CSSC GKVV G VDQS+ SFLDD+QI  GFVLTC AYPT
Sbjct:    2 ATTPALYGTAVSTSFLRTQPMPMSVTTTKAFSNGFLGLKTSLKRGDLAVAMASYKVKLVTPDGTQEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPT 134          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 3.315e-36
Identity = 76/133 (57.14%), Postives = 99/133 (74.44%), Query Frame = 1
Query:   40 AATMATLSSAMVSTSFIRSKPTATSLKAMP-NMGQAIFGLKA-NRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            AAT  T+    ++T+F+        + A+P N G+++FGLK  +RGGR+  MA YKV L+TP G  E  CPDD +ILDAAEE G+DLPYSCRAG+CSSC GK+ +G+++Q +QSFLDDDQI EG+VLTCAAYP
Sbjct:    2 AATTTTMMG--MATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMT-MAAYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYP 131          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER3_RAPSA (Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.148e-35
Identity = 67/82 (81.71%), Postives = 75/82 (91.46%), Query Frame = 1
Query:  190 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPT 435
            ATYKVK ITP GE+E+ C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG+VDQS+QSFLDDDQI EGFVLTCAAYPT
Sbjct:    1 ATYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDDQIAEGFVLTCAAYPT 82          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER_BRANA (Ferredoxin OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.066e-34
Identity = 66/82 (80.49%), Postives = 74/82 (90.24%), Query Frame = 1
Query:  190 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPT 435
            ATYKVK ITP GE+E+ C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG VDQS++SFLDDDQI EGFVLTCAAYPT
Sbjct:    1 ATYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPT 82          
The following BLAST results are available for this feature:
BLAST of CF510024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER2_ARATH1.098e-4772.09Ferredoxin-2, chloroplastic OS=Arabidopsis thalian... [more]
FER1_ARATH1.028e-4568.22Ferredoxin-1, chloroplastic OS=Arabidopsis thalian... [more]
FER_CAPAN5.102e-4564.06Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP... [more]
FER1_SOLLC1.137e-4464.84Ferredoxin-1, chloroplastic OS=Solanum lycopersicu... [more]
FER1_MESCR4.042e-4264.18Ferredoxin-1, chloroplastic OS=Mesembryanthemum cr... [more]
FER_SILPR4.183e-3962.02Ferredoxin, chloroplastic OS=Silene pratensis GN=P... [more]
FER1_PEA4.625e-3858.65Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PE... [more]
FER1_SPIOL3.315e-3657.14Ferredoxin-1, chloroplastic OS=Spinacia oleracea G... [more]
FER3_RAPSA2.148e-3581.71Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1[more]
FER_BRANA1.066e-3480.49Ferredoxin OS=Brassica napus PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-539 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510024 ID=CF510024; Name=CF510024; organism=Citrus sinensis; type=EST; length=436bp
TCAAAACCAAAAACTCAACTGTCCCTTCCTTGAGCAAGAGCAGCAACAAT
GGCCACCCTCTCAAGCGCCATGGTCAGCACCTCATTCATCAGAAGCAAGC
CTACAGCGACCAGCCTCAAAGCCATGCCTAACATGGGTCAGGCTATATTT
GGCCTCAAAGCCAACAGAGGTGGCCGTGTTGTAGCCATGGCTACATACAA
AGTCAAGCTCATTACACCTGGGGGAGAGGAAGAAATCAACTGTCCTGATG
ACTCGTTTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTAC
TCATGCAGGGCTGGGGCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGG
AACCGTTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATTGGAG
AAGGTTTTGTTCTCACTTGTGCTGCTTATCCAACAA
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