CF510024

Overview
NameCF510024
Unique NameCF510024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER_GLEJA (Ferredoxin OS=Gleichenia japonica PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.953e-32
Identity = 63/81 (77.78%), Postives = 68/81 (83.95%), Query Frame = 1
Query:  190 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            A +KVK +TP GE  I  PDD FILDA EEAGLDLPYSCRAGACSSCTGK++ G VDQSEQSFLDDDQ+ EGFVLTC AYP
Sbjct:    1 AIFKVKFLTPDGERTIEVPDDKFILDAGEEAGLDLPYSCRAGACSSCTGKLLDGRVDQSEQSFLDDDQMAEGFVLTCVAYP 81          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER5_MAIZE (Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.953e-32
Identity = 72/129 (55.81%), Postives = 90/129 (69.77%), Query Frame = 1
Query:   49 MATLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPT 435
            MAT+ S+  + +F      + SL+A P    A   +      R+ A ATY VKLITP GE E+  PDD +ILD AEE G+DLPYSCRAG+CSSC GKVVSG++DQS+QSFLDD Q+ +G+VLTC AYPT
Sbjct:    1 MATVLSSPRAPAF------SFSLRAAPATTVA---MTRGASSRLRAQATYNVKLITPEGEVELQVPDDVYILDYAEEEGIDLPYSCRAGSCSSCAGKVVSGSLDQSDQSFLDDSQVADGWVLTCVAYPT 120          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER_SOLLS (Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 6.469e-32
Identity = 63/81 (77.78%), Postives = 68/81 (83.95%), Query Frame = 1
Query:  190 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            A+YKVKLITP G  E NCPDD +ILD AEE G DLPYSCRAGACSSC GK+V G+VDQS+ SFLDDDQIG GFVLTC AYP
Sbjct:    1 ASYKVKLITPDGPIEFNCPDDVYILDRAEEEGHDLPYSCRAGACSSCAGKIVDGSVDQSDNSFLDDDQIGGGFVLTCVAYP 81          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER_CHLRE (Ferredoxin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETF PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 6.469e-32
Identity = 66/92 (71.74%), Postives = 74/92 (80.43%), Query Frame = 1
Query:  160 ANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPT 435
            A    R+  MA YKV L TP G++ I CP D++ILDAAEEAGLDLPYSCRAGACSSC GKV +GTVDQS+QSFLDD Q+G GFVLTC AYPT
Sbjct:   22 ARPASRMSCMA-YKVTLKTPSGDKTIECPADTYILDAAEEAGLDLPYSCRAGACSSCAGKVAAGTVDQSDQSFLDDAQMGNGFVLTCVAYPT 112          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER_HORVU (Ferredoxin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.882e-31
Identity = 61/81 (75.31%), Postives = 71/81 (87.65%), Query Frame = 1
Query:  190 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            ATYKVKL+TP GE E+  PDD +ILD AEE G+DLPYSCRAG+CSSC GK+VSG +DQS+QSFLDDDQ+ EG+VLTCAAYP
Sbjct:    1 ATYKVKLVTPEGEVELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEEGWVLTCAAYP 81          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER_COLES (Ferredoxin OS=Colocasia esculenta PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.882e-31
Identity = 60/81 (74.07%), Postives = 69/81 (85.19%), Query Frame = 1
Query:  190 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            ATYKVKL+TP G++E  CPDD +ILD AEE G+DLPYSCRAG+CSSC GKV  G VDQS+ SFLDD+QIGEG+VLTC AYP
Sbjct:    1 ATYKVKLVTPSGQQEFQCPDDVYILDQAEEVGIDLPYSCRAGSCSSCAGKVKVGDVDQSDGSFLDDEQIGEGWVLTCVAYP 81          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER1_ORYSJ (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. japonica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.458e-31
Identity = 62/88 (70.45%), Postives = 71/88 (80.68%), Query Frame = 1
Query:  169 GGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            G R+   ATY VKLITP GE E+  PDD +ILD AEE G+DLPYSCRAG+CSSC GKVVSG +DQS+QSFLDDDQ+  G+VLTC AYP
Sbjct:   37 GDRLRMQATYNVKLITPDGEVELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYP 124          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER1_ORYSI (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. indica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.458e-31
Identity = 62/88 (70.45%), Postives = 71/88 (80.68%), Query Frame = 1
Query:  169 GGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            G R+   ATY VKLITP GE E+  PDD +ILD AEE G+DLPYSCRAG+CSSC GKVVSG +DQS+QSFLDDDQ+  G+VLTC AYP
Sbjct:   37 GDRLRMQATYNVKLITPDGEVELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYP 124          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FERB_ALOMA (Ferredoxin-B OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.193e-31
Identity = 62/83 (74.70%), Postives = 70/83 (84.34%), Query Frame = 1
Query:  190 ATYKVKLITPGGEE-EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPT 435
            ATYKVKL+TP G+  E  CPDD +ILD AEE G+DLPYSCRAG+CSSC GKV +G VDQS+ SFLDDDQIGEG+VLTC AYPT
Sbjct:    1 ATYKVKLVTPSGQPLEFECPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVKNGNVDQSDGSFLDDDQIGEGWVLTCVAYPT 83          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER_DATST (Ferredoxin OS=Datura stramonium PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 9.341e-31
Identity = 59/81 (72.84%), Postives = 68/81 (83.95%), Query Frame = 1
Query:  190 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            ATYKVKL+TP G  E NCPDD +ILD AEE G DLPYSCRAG+CSSC GKV +GTVDQS+ ++LDDDQ+ +GFVLTC AYP
Sbjct:    1 ATYKVKLVTPDGPVEFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYP 81          
The following BLAST results are available for this feature:
BLAST of CF510024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_GLEJA4.953e-3277.78Ferredoxin OS=Gleichenia japonica PE=1 SV=1[more]
FER5_MAIZE4.953e-3255.81Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE... [more]
FER_SOLLS6.469e-3277.78Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1[more]
FER_CHLRE6.469e-3271.74Ferredoxin, chloroplastic OS=Chlamydomonas reinhar... [more]
FER_HORVU1.882e-3175.31Ferredoxin OS=Hordeum vulgare PE=1 SV=1[more]
FER_COLES1.882e-3174.07Ferredoxin OS=Colocasia esculenta PE=1 SV=1[more]
FER1_ORYSJ2.458e-3170.45Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER1_ORYSI2.458e-3170.45Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FERB_ALOMA4.193e-3174.70Ferredoxin-B OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER_DATST9.341e-3172.84Ferredoxin OS=Datura stramonium PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-539 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510024 ID=CF510024; Name=CF510024; organism=Citrus sinensis; type=EST; length=436bp
TCAAAACCAAAAACTCAACTGTCCCTTCCTTGAGCAAGAGCAGCAACAAT
GGCCACCCTCTCAAGCGCCATGGTCAGCACCTCATTCATCAGAAGCAAGC
CTACAGCGACCAGCCTCAAAGCCATGCCTAACATGGGTCAGGCTATATTT
GGCCTCAAAGCCAACAGAGGTGGCCGTGTTGTAGCCATGGCTACATACAA
AGTCAAGCTCATTACACCTGGGGGAGAGGAAGAAATCAACTGTCCTGATG
ACTCGTTTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTAC
TCATGCAGGGCTGGGGCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGG
AACCGTTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATTGGAG
AAGGTTTTGTTCTCACTTGTGCTGCTTATCCAACAA
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