CF510024

Overview
NameCF510024
Unique NameCF510024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER1_CYAPA (Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 1.948e-28
Identity = 59/85 (69.41%), Postives = 68/85 (80.00%), Query Frame = 1
Query:  187 MATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPT 435
            MA YKV+LI    G +  I CPDD +ILDAAEE G+DLPYSCRAGACS+C GKVV GTVDQS+QSFLDD Q+  G+VLTC AYP+
Sbjct:    1 MAVYKVRLICEEQGLDTTIECPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKVVEGTVDQSDQSFLDDAQLAAGYVLTCVAYPS 85          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER_THEVL (Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=petF1 PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 3.322e-28
Identity = 58/83 (69.88%), Postives = 68/83 (81.93%), Query Frame = 1
Query:  187 MATYKVKLITPGGEEE-INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            MATYKV L+ P G E  I+ P+D +ILD AEE GLDLP+SCRAGACS+C GK++ G VDQS+QSFLDDDQI +GFVLTC AYP
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYP 83          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER_THEEB (Ferredoxin-1 OS=Thermosynechococcus elongatus (strain BP-1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 3.322e-28
Identity = 58/83 (69.88%), Postives = 68/83 (81.93%), Query Frame = 1
Query:  187 MATYKVKLITPGGEEE-INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            MATYKV L+ P G E  I+ P+D +ILD AEE GLDLP+SCRAGACS+C GK++ G VDQS+QSFLDDDQI +GFVLTC AYP
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYP 83          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER_SYNEN (Ferredoxin-1 OS=Synechococcus elongatus naegeli GN=petF1 PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 3.322e-28
Identity = 58/83 (69.88%), Postives = 68/83 (81.93%), Query Frame = 1
Query:  187 MATYKVKLITPGGEEE-INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            MATYKV L+ P G E  I+ P+D +ILD AEE GLDLP+SCRAGACS+C GK++ G VDQS+QSFLDDDQI +GFVLTC AYP
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYP 83          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.322e-28
Identity = 62/98 (63.27%), Postives = 76/98 (77.55%), Query Frame = 1
Query:  148 FGLK--ANRGGRVVAMATYKVKLITPGGEE-EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            FGLK  AN GG  ++ A YKVKL+ P G+E E    DD +ILDAAEEAG+DLPYSCRAGACS+C G++VSG VDQS+ SFL+D  + +G+VLTC AYP
Sbjct:   44 FGLKCSANSGGATMS-AVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYP 140          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER1_NOSMU (Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 4.339e-28
Identity = 61/85 (71.76%), Postives = 70/85 (82.35%), Query Frame = 1
Query:  187 MAT-YKVKLITPGGEEE-INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPT 435
            MAT YKV L+   G E  I+ PDD +ILD AE+ GLDLPYSCRAGACS+C GK+VSGTVDQS+QSFLDDDQI +G+VLTC AYPT
Sbjct:    1 MATVYKVTLVDQEGTETTIDVPDDEYILDIAEDQGLDLPYSCRAGACSTCAGKIVSGTVDQSDQSFLDDDQIEKGYVLTCVAYPT 85          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER1_ANAVT (Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petF1 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 4.339e-28
Identity = 60/85 (70.59%), Postives = 68/85 (80.00%), Query Frame = 1
Query:  187 MATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPT 435
            MAT+KV LI    G    I+ PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQS+QSFLDDDQI  G+VLTC AYPT
Sbjct:    1 MATFKVTLINEAEGTSNTIDVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPT 85          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER_MEDSA (Ferredoxin OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 7.401e-28
Identity = 56/80 (70.00%), Postives = 66/80 (82.50%), Query Frame = 1
Query:  190 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAY 429
            A+YKVKL+TP G +E  CPDD +ILD AEE G+ LPYSCRAG+CSSC GKV +G V+QS+ SFLDDDQI EG+VLTC AY
Sbjct:    1 ASYKVKLVTPEGTQEFECPDDVYILDHAEEEGIVLPYSCRAGSCSSCAGKVAAGEVNQSDGSFLDDDQIEEGWVLTCVAY 80          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER_APHSA (Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 7.401e-28
Identity = 56/83 (67.47%), Postives = 64/83 (77.11%), Query Frame = 1
Query:  187 MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPT 435
            MA+YKV L TP G+  I  PDD +ILD AEE GLDLPYSCRAGACS+C GK+VSG     +QSFLDDDQI  G++LTC AYPT
Sbjct:    1 MASYKVTLKTPDGDNVITVPDDEYILDVAEEEGLDLPYSCRAGACSTCAGKLVSGPAPDEDQSFLDDDQIQAGYILTCVAYPT 83          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER_PANGI (Ferredoxin OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 9.666e-28
Identity = 55/78 (70.51%), Postives = 64/78 (82.05%), Query Frame = 1
Query:  196 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAY 429
            YKVKL+TP GE+E  CPDD +ILD AEE G+DLPYSCRAG+CSSC GKVVSG VD S+ SFL+DD +  G+VLTC AY
Sbjct:    4 YKVKLLTPEGEKEFECPDDVYILDNAEEIGIDLPYSCRAGSCSSCAGKVVSGKVDNSDNSFLNDDNMDAGYVLTCHAY 81          
The following BLAST results are available for this feature:
BLAST of CF510024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER1_CYAPA1.948e-2869.41Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 S... [more]
FER_THEVL3.322e-2869.88Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=pe... [more]
FER_THEEB3.322e-2869.88Ferredoxin-1 OS=Thermosynechococcus elongatus (str... [more]
FER_SYNEN3.322e-2869.88Ferredoxin-1 OS=Synechococcus elongatus naegeli GN... [more]
FER3_ARATH3.322e-2863.27Ferredoxin-3, chloroplastic OS=Arabidopsis thalian... [more]
FER1_NOSMU4.339e-2871.76Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2[more]
FER1_ANAVT4.339e-2870.59Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 2... [more]
FER_MEDSA7.401e-2870.00Ferredoxin OS=Medicago sativa PE=1 SV=1[more]
FER_APHSA7.401e-2867.47Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2[more]
FER_PANGI9.666e-2870.51Ferredoxin OS=Panax ginseng PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-539 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510024 ID=CF510024; Name=CF510024; organism=Citrus sinensis; type=EST; length=436bp
TCAAAACCAAAAACTCAACTGTCCCTTCCTTGAGCAAGAGCAGCAACAAT
GGCCACCCTCTCAAGCGCCATGGTCAGCACCTCATTCATCAGAAGCAAGC
CTACAGCGACCAGCCTCAAAGCCATGCCTAACATGGGTCAGGCTATATTT
GGCCTCAAAGCCAACAGAGGTGGCCGTGTTGTAGCCATGGCTACATACAA
AGTCAAGCTCATTACACCTGGGGGAGAGGAAGAAATCAACTGTCCTGATG
ACTCGTTTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTAC
TCATGCAGGGCTGGGGCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGG
AACCGTTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATTGGAG
AAGGTTTTGTTCTCACTTGTGCTGCTTATCCAACAA
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