CF510024

Overview
NameCF510024
Unique NameCF510024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER_SYNP4 (Ferredoxin OS=Synechococcus sp. (strain PCC 7418) PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.381e-26
Identity = 56/84 (66.67%), Postives = 64/84 (76.19%), Query Frame = 1
Query:  187 MATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            MA+YKV LI    G  E I  PDD +ILD AEE G+DLPYSCRAGACS+C GK+  G +DQS+QSFLDDDQI  G+VLTC AYP
Sbjct:    1 MASYKVTLINEEMGLNETIEVPDDEYILDVAEEEGIDLPYSCRAGACSTCAGKIKEGEIDQSDQSFLDDDQIEAGYVLTCVAYP 84          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.110e-26
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 1
Query:  190 ATYKVKLITPGGEE-EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            A YKVKLI P G+E E + PDD +ILDAAEEAG+DLPYSCRAGACS+C GK+  G VDQS+ SFL+D    +G+VLTC AYP
Sbjct:    2 AVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQSDGSFLEDHHFEKGYVLTCVAYP 83          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER_RHOPL (Ferredoxin OS=Rhodymenia palmata PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.061e-26
Identity = 53/80 (66.25%), Postives = 64/80 (80.00%), Query Frame = 1
Query:  196 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPT 435
            Y V L TPGG EEI   + +++LD+AE+ G+DLPYSCRAGACS+C G V  GTVDQS+QSFLDDDQ+ + FVLTC AYPT
Sbjct:    4 YTVTLSTPGGVEEIEGDETTYVLDSAEDQGIDLPYSCRAGACSTCAGIVELGTVDQSDQSFLDDDQLNDSFVLTCVAYPT 83          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER_PORYE (Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.543e-25
Identity = 53/85 (62.35%), Postives = 67/85 (78.82%), Query Frame = 1
Query:  187 MATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPT 435
            MA YK+ L+    G +   NC +D++ILDAAEE G++LPYSCRAGACS+C GKV  GTVDQ++QSFLDDDQ+  G+VLTC AYP+
Sbjct:    1 MADYKIHLLCEEEGIDVTFNCAEDTYILDAAEEEGIELPYSCRAGACSTCAGKVTEGTVDQADQSFLDDDQLLAGYVLTCIAYPS 85          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER1_EQUTE (Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.543e-25
Identity = 56/79 (70.89%), Postives = 63/79 (79.75%), Query Frame = 1
Query:  196 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            YK  L TP GE  ++ P+ + ILDAAEEAG DLP+SCRAGACSSC GKVVSG+VDQSE SFLDD Q+ EGFVLTC A P
Sbjct:    2 YKTVLKTPSGEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDQSEGSFLDDGQMEEGFVLTCIAIP 80          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER_PORPU (Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.632e-25
Identity = 52/84 (61.90%), Postives = 69/84 (82.14%), Query Frame = 1
Query:  187 MATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            MA YK+ L++   G +   +C +D++ILDAAEEAG++LPYSCRAGACS+C GKV  G+VDQS+QSFLDD+Q+ +G+VLTC AYP
Sbjct:    1 MADYKIHLLSEDEGIDVTFDCSEDTYILDAAEEAGIELPYSCRAGACSTCAGKVTEGSVDQSDQSFLDDEQLLKGYVLTCIAYP 84          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER1_EQUAR (Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.438e-25
Identity = 55/79 (69.62%), Postives = 63/79 (79.75%), Query Frame = 1
Query:  196 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            YK  L TP GE  ++ P+ + ILDAAEEAG DLP+SCRAGACSSC GKVVSG+VD+SE SFLDD Q+ EGFVLTC A P
Sbjct:    2 YKTVLKTPSGEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIP 80          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER_PORUM (Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.306e-24
Identity = 51/83 (61.45%), Postives = 67/83 (80.72%), Query Frame = 1
Query:  190 ATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            A YK+ L++   G +   +C +D++ILDAAEE G++LPYSCRAGACS+C GKV  GTVDQS+QSFLDD+Q+ +G+VLTC AYP
Sbjct:    1 ADYKIHLVSKEEGIDVTFDCSEDTYILDAAEEEGIELPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDEQMLKGYVLTCIAYP 83          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.228e-24
Identity = 57/115 (49.57%), Postives = 76/115 (66.09%), Query Frame = 1
Query:  100 PTATSLKAMPNMGQAIFGLKANRGGRVVAMAT---YKVKLITPGG-EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            P A +L    +  QA          R VA A    +KVKL+ P G E E   PDD++IL+AAE AG++LP+SCRAG+CS+C G++ +G VDQSE SFLDD Q+ EG++LTC +YP
Sbjct:   26 PAANTLSFAGHARQAARASGPRLSSRFVASAAAVLHKVKLVGPDGTEHEFEAPDDTYILEAAETAGVELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYP 140          
BLAST of CF510024 vs. ExPASy Swiss-Prot
Match: FER4_ARATH (Probable ferredoxin-4, chloroplastic OS=Arabidopsis thaliana GN=FD4 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.964e-24
Identity = 60/117 (51.28%), Postives = 79/117 (67.52%), Query Frame = 1
Query:   91 RSKPTATSLKAMPNMGQAIFGLKANRG--GRVVAMATYKVKLITPGGEE-EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYP 432
            R  P+   L    N     FGL ++RG  G+V A  + KVKLI+P GEE EI   +D  IL++AE AGL+LPYSCR+G C +C GK+VSG VDQS  SFL+++QI +G++LTC A P
Sbjct:   18 RISPSQAQLTTRLN-NTTYFGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALP 133          
The following BLAST results are available for this feature:
BLAST of CF510024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_SYNP42.381e-2666.67Ferredoxin OS=Synechococcus sp. (strain PCC 7418) ... [more]
FER1_RAPSA3.110e-2667.07Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=... [more]
FER_RHOPL4.061e-2666.25Ferredoxin OS=Rhodymenia palmata PE=1 SV=1[more]
FER_PORYE1.543e-2562.35Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1[more]
FER1_EQUTE1.543e-2570.89Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1[more]
FER_PORPU2.632e-2561.90Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2[more]
FER1_EQUAR3.438e-2569.62Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1[more]
FER_PORUM1.306e-2461.45Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV... [more]
FER6_MAIZE2.228e-2449.57Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE... [more]
FER4_ARATH4.964e-2451.28Probable ferredoxin-4, chloroplastic OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-539 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-84_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF510024 ID=CF510024; Name=CF510024; organism=Citrus sinensis; type=EST; length=436bp
TCAAAACCAAAAACTCAACTGTCCCTTCCTTGAGCAAGAGCAGCAACAAT
GGCCACCCTCTCAAGCGCCATGGTCAGCACCTCATTCATCAGAAGCAAGC
CTACAGCGACCAGCCTCAAAGCCATGCCTAACATGGGTCAGGCTATATTT
GGCCTCAAAGCCAACAGAGGTGGCCGTGTTGTAGCCATGGCTACATACAA
AGTCAAGCTCATTACACCTGGGGGAGAGGAAGAAATCAACTGTCCTGATG
ACTCGTTTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTAC
TCATGCAGGGCTGGGGCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGG
AACCGTTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATTGGAG
AAGGTTTTGTTCTCACTTGTGCTGCTTATCCAACAA
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