CF831999

Overview
NameCF831999
Unique NameCF831999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_LACLM (50S ribosomal protein L19 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rplS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.784e-16
Identity = 40/86 (46.51%), Postives = 63/86 (73.26%), Query Frame = -1
Query:  426 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 680
            +IPD +PG  V++   + E  R R+   +G+VIAR+N+GI+ T+ +R++  GVGVE +FP+++P + +I+V+   KVRRAKLYYLR
Sbjct:   15 DIPDFRPGDTVRVHAKVVEGTRERIQIFEGVVIARKNSGINETYTVRKISNGVGVERIFPVHTPRVEKIEVIRHGKVRRAKLYYLR 100          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_THEM4 (50S ribosomal protein L19 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplS PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.942e-16
Identity = 44/89 (49.44%), Postives = 64/89 (71.91%), Query Frame = -1
Query:  423 REIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVA-GVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 683
            +E+P+ +PG  V++ V   E NK R    +GIVI+ R +G+  TF +RR+ A G+GVE +FPLY+P I +I+V+ + KVRRAKLYYLR+
Sbjct:   16 KEVPEFRPGDTVRVYVKFKEGNKERTQAFEGIVISLRGSGVGKTFTVRRIGANGIGVERIFPLYAPIIEKIEVVRRGKVRRAKLYYLRN 104          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_RUBXD (50S ribosomal protein L19 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rplS PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.942e-16
Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = -1
Query:  417 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 686
            +R +PD KPG  ++++  V+  N+ R    +G+ IARR +GIS TF +R+   GV VE +FPL+SP I  IKV+ +   RRAKLYY+R+K+
Sbjct:    9 ERGVPDFKPGDTIRVEYRVVEGNRERTQAFEGLCIARRGSGISQTFVVRKNSFGVDVERIFPLHSPKIAGIKVISRGAPRRAKLYYIREKV 99          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_HELMI (50S ribosomal protein L19 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplS PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.942e-16
Identity = 43/89 (48.31%), Postives = 63/89 (70.79%), Query Frame = -1
Query:  423 QREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 686
            +++IPD KPG  V++ V + E N+ R+   +GIVI RR  G+S TF +RR+  GV VE  F ++SP + +I+V+ + +VRRAKLYYLRD
Sbjct:   14 RKDIPDFKPGDTVKVHVKVVEGNRERIQLFEGIVIKRRGGGLSETFTVRRVSYGVAVERTFLVHSPRLDKIEVVRRGRVRRAKLYYLRD 102          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_DESRM (50S ribosomal protein L19 OS=Desulfotomaculum reducens (strain MI-1) GN=rplS PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.942e-16
Identity = 41/88 (46.59%), Postives = 61/88 (69.32%), Query Frame = -1
Query:  426 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 686
            ++E+P  +PG  +++   VI  N+ R+   +G+VI RR  G+S TF +RR+  GVGVE  FPL++P I  I+V+ + KVRRA+LYYLR
Sbjct:   13 KKELPSFRPGDTIKVNYKVIEGNRERIQAFEGVVIRRRGGGLSETFTVRRISYGVGVERTFPLHAPKIDSIEVVRRGKVRRARLYYLR 100          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_SYNY3 (50S ribosomal protein L19 OS=Synechocystis sp. (strain PCC 6803) GN=rplS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.454e-16
Identity = 44/91 (48.35%), Postives = 62/91 (68.13%), Query Frame = -1
Query:  417 QREIPDIKPGYIVQLKVVIPEN-KRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 686
            + ++P I  G  +++ V I E  K R+   +G VIA+RN GIS T  +R++  GVGVE +F L+SP +  IKVL + KVRRAKLYYLRD++
Sbjct:   18 KEDLPTIHVGDTIKVGVKIVEGGKERIQPYEGTVIAKRNGGISETITVRKIFQGVGVERVFLLHSPRVASIKVLRRGKVRRAKLYYLRDRV 108          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_SPHWW (50S ribosomal protein L19 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rplS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.454e-16
Identity = 42/89 (47.19%), Postives = 62/89 (69.66%), Query Frame = -1
Query:  420 REIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 683
            + IPD +PG  +++ V + E +R RV   +G+ IAR N G+ ++F +R++  G GVE +FPLYSPN+  I+V+ K  VRRAKLYYLR +
Sbjct:   19 KSIPDFRPGDTLRVGVKVVEGERTRVQAYEGVCIARANKGMGSSFTVRKISFGEGVERVFPLYSPNVESIEVVRKGVVRRAKLYYLRGR 107          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_GEOMG (50S ribosomal protein L19 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rplS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.454e-16
Identity = 42/88 (47.73%), Postives = 63/88 (71.59%), Query Frame = -1
Query:  426 QREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 686
            ++ IP  KPG  V++ V I E +K R+   +G+VIAR+N GI  +F +R++  G+GVE +FPL+SP++  I+V+ +  VRRAKLYYLR
Sbjct:   13 KKNIPPFKPGDTVKVHVKIVEGDKSRIQAFQGVVIARQNGGIRESFTVRKISNGIGVERVFPLHSPSLDAIEVITRGHVRRAKLYYLR 100          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_CORJK (50S ribosomal protein L19 OS=Corynebacterium jeikeium (strain K411) GN=rplS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.454e-16
Identity = 42/88 (47.73%), Postives = 62/88 (70.45%), Query Frame = -1
Query:  420 EIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 680
            +IP+ + G  + + V VI  +K R+   +G+VI R+N+GI  TF +R++  G+GVE  FP++SPNI  I VL + KVRRAKLYYLR++
Sbjct:   15 DIPEFRAGDTLDVHVKVIEGSKSRLQVFRGVVIRRQNSGIRETFTIRKVSFGIGVERTFPVHSPNIDRIDVLSRGKVRRAKLYYLRER 102          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_CARHZ (50S ribosomal protein L19 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.454e-16
Identity = 40/88 (45.45%), Postives = 64/88 (72.73%), Query Frame = -1
Query:  426 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 686
            ++++P+ +PG  V++   VI  N+ R+   +G+VI +R +G+S TF +RR+  G+GVE  FPL+SP I +I+V+ + KVRRA+LYYLR
Sbjct:   13 RKDLPEFRPGDTVKVYFKVIEGNRERIQPYEGVVIRKRGSGLSATFTVRRVSYGIGVERTFPLHSPRIEKIEVIRRGKVRRARLYYLR 100          
The following BLAST results are available for this feature:
BLAST of CF831999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_LACLM3.784e-1646.5150S ribosomal protein L19 OS=Lactococcus lactis su... [more]
RL19_THEM44.942e-1649.4450S ribosomal protein L19 OS=Thermosipho melanesie... [more]
RL19_RUBXD4.942e-1646.1550S ribosomal protein L19 OS=Rubrobacter xylanophi... [more]
RL19_HELMI4.942e-1648.3150S ribosomal protein L19 OS=Heliobacterium modest... [more]
RL19_DESRM4.942e-1646.5950S ribosomal protein L19 OS=Desulfotomaculum redu... [more]
RL19_SYNY36.454e-1648.3550S ribosomal protein L19 OS=Synechocystis sp. (st... [more]
RL19_SPHWW6.454e-1647.1950S ribosomal protein L19 OS=Sphingomonas wittichi... [more]
RL19_GEOMG6.454e-1647.7350S ribosomal protein L19 OS=Geobacter metalliredu... [more]
RL19_CORJK6.454e-1647.7350S ribosomal protein L19 OS=Corynebacterium jeike... [more]
RL19_CARHZ6.454e-1645.4550S ribosomal protein L19 OS=Carboxydothermus hydr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831999 ID=CF831999; Name=CF831999; organism=Citrus sinensis; type=EST; length=689bp
TTTTAAACAGACCCATTACCTTCATCTCCATATTATTAACCGAGTACATG
CAGCCTTACGCGTATTGATGGAAGAAATGAGCTGTCTCTGGCGCAATGCC
CATGTTCAAATGCATGATCTATAATTACAAAACAAGACCTTTTATGGGTA
ACATTAATGAAGCCAAAATTTTACCACTTCTAGCGGCTTTCTGGGGATTC
CATTCAAGTTTGGAACTCCTTGCCCCTCCCAACCATGCCAGCACAGCAAT
TAACAGAGATGCTAAACTAAACCTTAATTGGAAAAAGAAAGGGTAAAATG
AAAACACAAATAGTTTGTGAAATTTGTCACCAATGCAATACAACCCAACT
ATCCATCACAAGGAACTCACAGAATCCTCCCACCAATAAAGCTTCTTATT
TATTTCTAAGTGGATTCAGCTTATCCCTCAGATAGTAAAGCTTGGCCCTC
CTCACTTTCTTCTTGTCCAGCACCTTTATTTCTAGTATATTAGGTGAGTA
CAAAGGGAAAAGAGATTCGACTCCAACCCCTGCNACCAGCCTCCTCAATC
TAAATGTAGTACTTATACCAGCATTACGCCTTGCTATAACAATACCCTTT
AAAGTTGAAACACGTCTCTTGTTCTCTGGAATTACCACTTTTAGTTGCAC
GATATAACCAGGCTTTATATCGGGGATCTCCCTCTGTGA
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