CF831999

Overview
NameCF831999
Unique NameCF831999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_MYCA5 (50S ribosomal protein L19 OS=Mycoplasma arthritidis (strain 158L3-1) GN=rplS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = -1
Query:  423 EIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 680
            ++P+I+ GY V++ V I E NK R+   +G+VIA    GI+ +  +R+   GVGVE +F L SP I  I+V    KVRRAKLYY+RD
Sbjct:   17 DLPEIREGYNVKVHVRIKEGNKERIQVFEGLVIASYGTGINKSITVRKDSYGVGVERIFKLNSPLIAHIEVTRINKVRRAKLYYMRD 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_DIAST (50S ribosomal protein L19 OS=Diaphorobacter sp. (strain TPSY) GN=rplS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = -1
Query:  420 REIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 683
            + IP   PG  V + V V+   ++RV   +G+VIA+RN G+++ F +R++ +G GVE  F  YSP I  I+V  +  VRRAKLYYLR++
Sbjct:   17 KTIPSFAPGDTVIVNVNVVEGTRKRVQAYEGVVIAKRNRGLNSGFTVRKISSGEGVERTFQTYSPLIASIEVKRRGDVRRAKLYYLRER 105          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_CHLSY (50S ribosomal protein L19 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rplS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13
Identity = 41/89 (46.07%), Postives = 60/89 (67.42%), Query Frame = -1
Query:  420 EIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVA-GVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 680
            +IP+ + G  V++ V + E N+ RV   +G+VI RR  GI+  F +RR+ + G+GVE  F L++P I  IKV+ + KVRRAKLYYLR +
Sbjct:   17 DIPEFRVGDTVRVGVKVVEGNRERVQDFEGVVIRRRGEGINENFTVRRIASHGIGVERTFLLHAPRIDSIKVIRQGKVRRAKLYYLRGR 105          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_CHLAA (50S ribosomal protein L19 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rplS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13
Identity = 41/89 (46.07%), Postives = 60/89 (67.42%), Query Frame = -1
Query:  420 EIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVA-GVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 680
            +IP+ + G  V++ V + E N+ RV   +G+VI RR  GI+  F +RR+ + G+GVE  F L++P I  IKV+ + KVRRAKLYYLR +
Sbjct:   17 DIPEFRVGDTVRVGVKVVEGNRERVQDFEGVVIRRRGEGINENFTVRRIASHGIGVERTFLLHAPRIDSIKVIRQGKVRRAKLYYLRGR 105          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_BARQU (50S ribosomal protein L19 OS=Bartonella quintana GN=rplS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13
Identity = 38/89 (42.70%), Postives = 60/89 (67.42%), Query Frame = -1
Query:  426 SQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 689
            ++R++P  + G  V++ V + E  R RV   +G+ IAR   G++ TF +R++  G GVE +FP+YSP I  ++++ + KVRRAKLYYLR
Sbjct:   17 AKRQLPKFQAGDTVRVMVRVTEGTRTRVQAYEGVCIARSGGGLNETFTVRKISYGEGVERVFPVYSPLIEGVELVRRGKVRRAKLYYLR 105          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_AKKM8 (50S ribosomal protein L19 OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=rplS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13
Identity = 35/73 (47.95%), Postives = 54/73 (73.97%), Query Frame = -1
Query:  417 VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 635
            VI   K R+   +GIVIA+R +GI+  F +R++  G GVE +FPL++P I +I+V+++ KVRRAKL+YLR ++
Sbjct:   31 VIEGGKERIQIFQGIVIAKRGSGINEAFTVRKISYGEGVERVFPLHTPRIAKIEVVNRGKVRRAKLHYLRGRI 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ACISJ (50S ribosomal protein L19 OS=Acidovorax sp. (strain JS42) GN=rplS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = -1
Query:  420 REIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 683
            + IP   PG  V + V V+   ++RV   +G+VIA+RN G+++ F +R++ +G GVE  F  YSP I  I+V  +  VRRAKLYYLR++
Sbjct:   17 KTIPSFAPGDTVIVNVNVVEGTRKRVQAYEGVVIAKRNRGLNSGFTVRKISSGEGVERTFQTYSPLIASIEVKRRGDVRRAKLYYLRER 105          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_PROAC (50S ribosomal protein L19 OS=Propionibacterium acnes GN=rplS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = -1
Query:  420 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 680
            +IP+ +PG  V++ V + E  R RV    GIVI+R   G+  +F +R+L  G GVE  FPL+SP I +I+V     VRRAKLYYLR +
Sbjct:   16 DIPEFRPGDSVKVHVKVVEGSRTRVQVFSGIVISRTGGGVQESFTVRKLSFGTGVERTFPLHSPIIDKIEVDRHGAVRRAKLYYLRGR 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_POLSQ (50S ribosomal protein L19 OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 39/91 (42.86%), Postives = 58/91 (63.74%), Query Frame = -1
Query:  420 SQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 689
            + + +P   PG  V + V + E  R R    +G+VIA+RN G++++F +R++ +G GVE  F  YSP I  I+V  +  VRRAKLYYLRD+
Sbjct:   17 ANKTLPSFAPGDTVVVGVNVVEGARKRTQAFEGVVIAKRNRGLNSSFIVRKISSGEGVERTFQTYSPLIASIEVKRRGDVRRAKLYYLRDR 107          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_METPP (50S ribosomal protein L19 OS=Methylibium petroleiphilum (strain PM1) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 39/89 (43.82%), Postives = 59/89 (66.29%), Query Frame = -1
Query:  420 REIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 683
            + IP   PG  V + V V+   ++R+   +G+VIA+RN G++++F +R++ +G GVE  F LYSP I  I+V  +  VRRAKLYYLR +
Sbjct:   17 KTIPAFAPGDTVIVSVNVVEGTRKRLQAYEGVVIAKRNRGLNSSFIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRQR 105          
The following BLAST results are available for this feature:
BLAST of CF831999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_MYCA53.916e-1347.1350S ribosomal protein L19 OS=Mycoplasma arthritidi... [more]
RL19_DIAST3.916e-1343.8250S ribosomal protein L19 OS=Diaphorobacter sp. (s... [more]
RL19_CHLSY3.916e-1346.0750S ribosomal protein L19 OS=Chloroflexus aurantia... [more]
RL19_CHLAA3.916e-1346.0750S ribosomal protein L19 OS=Chloroflexus aurantia... [more]
RL19_BARQU3.916e-1342.7050S ribosomal protein L19 OS=Bartonella quintana G... [more]
RL19_AKKM83.916e-1347.9550S ribosomal protein L19 OS=Akkermansia muciniphi... [more]
RL19_ACISJ3.916e-1343.8250S ribosomal protein L19 OS=Acidovorax sp. (strai... [more]
RL19_PROAC5.114e-1346.5950S ribosomal protein L19 OS=Propionibacterium acn... [more]
RL19_POLSQ5.114e-1342.8650S ribosomal protein L19 OS=Polynucleobacter sp. ... [more]
RL19_METPP5.114e-1343.8250S ribosomal protein L19 OS=Methylibium petroleip... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831999 ID=CF831999; Name=CF831999; organism=Citrus sinensis; type=EST; length=689bp
TTTTAAACAGACCCATTACCTTCATCTCCATATTATTAACCGAGTACATG
CAGCCTTACGCGTATTGATGGAAGAAATGAGCTGTCTCTGGCGCAATGCC
CATGTTCAAATGCATGATCTATAATTACAAAACAAGACCTTTTATGGGTA
ACATTAATGAAGCCAAAATTTTACCACTTCTAGCGGCTTTCTGGGGATTC
CATTCAAGTTTGGAACTCCTTGCCCCTCCCAACCATGCCAGCACAGCAAT
TAACAGAGATGCTAAACTAAACCTTAATTGGAAAAAGAAAGGGTAAAATG
AAAACACAAATAGTTTGTGAAATTTGTCACCAATGCAATACAACCCAACT
ATCCATCACAAGGAACTCACAGAATCCTCCCACCAATAAAGCTTCTTATT
TATTTCTAAGTGGATTCAGCTTATCCCTCAGATAGTAAAGCTTGGCCCTC
CTCACTTTCTTCTTGTCCAGCACCTTTATTTCTAGTATATTAGGTGAGTA
CAAAGGGAAAAGAGATTCGACTCCAACCCCTGCNACCAGCCTCCTCAATC
TAAATGTAGTACTTATACCAGCATTACGCCTTGCTATAACAATACCCTTT
AAAGTTGAAACACGTCTCTTGTTCTCTGGAATTACCACTTTTAGTTGCAC
GATATAACCAGGCTTTATATCGGGGATCTCCCTCTGTGA
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