CF831999

Overview
NameCF831999
Unique NameCF831999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_JANSC (50S ribosomal protein L19 OS=Jannaschia sp. (strain CCS1) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 41/90 (45.56%), Postives = 60/90 (66.67%), Query Frame = -1
Query:  420 REIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNA-GISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 683
            ++IPD K G  V++   + E  R RV   +G+ IAR+N  GI+ +F +R++  G GVE +FPL+S NI  I V+ + +VRRAKLYYLR +
Sbjct:   17 KDIPDFKAGDTVRVGFRVTEGTRTRVQNYEGVCIARKNGHGIAGSFTVRKISFGEGVERVFPLHSTNIDSITVIRRGRVRRAKLYYLRSR 106          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_FUSNN (50S ribosomal protein L19 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 38/86 (44.19%), Postives = 55/86 (63.95%), Query Frame = -1
Query:  426 EIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 680
            +IP  K G  + +   + E NK RV   +G+VI     G++ TF +R++ AG+GVE + P+ SPNI  I+VL   +VRR+KLYYLR
Sbjct:   17 DIPQFKAGDTIGVYYKVKEGNKERVQLFEGVVIRVNGGGVAKTFTVRKVTAGIGVERIIPVNSPNIDRIEVLKVGRVRRSKLYYLR 102          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ESCF3 (50S ribosomal protein L19 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = -1
Query:  420 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:   14 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ECOUT (50S ribosomal protein L19 OS=Escherichia coli (strain UTI89 / UPEC) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = -1
Query:  420 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:   14 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ECOSM (50S ribosomal protein L19 OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = -1
Query:  420 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:   14 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ECOSE (50S ribosomal protein L19 OS=Escherichia coli (strain SE11) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = -1
Query:  420 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:   14 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ECOLU (50S ribosomal protein L19 OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = -1
Query:  420 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:   14 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ECOLI (50S ribosomal protein L19 OS=Escherichia coli (strain K12) GN=rplS PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = -1
Query:  420 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:   14 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ECOLC (50S ribosomal protein L19 OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = -1
Query:  420 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:   14 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ECOL6 (50S ribosomal protein L19 OS=Escherichia coli O6 GN=rplS PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = -1
Query:  420 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:   14 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103          
The following BLAST results are available for this feature:
BLAST of CF831999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_JANSC6.679e-1345.5650S ribosomal protein L19 OS=Jannaschia sp. (strai... [more]
RL19_FUSNN6.679e-1344.1950S ribosomal protein L19 OS=Fusobacterium nucleat... [more]
RL19_ESCF36.679e-1340.0050S ribosomal protein L19 OS=Escherichia fergusoni... [more]
RL19_ECOUT6.679e-1340.0050S ribosomal protein L19 OS=Escherichia coli (str... [more]
RL19_ECOSM6.679e-1340.0050S ribosomal protein L19 OS=Escherichia coli (str... [more]
RL19_ECOSE6.679e-1340.0050S ribosomal protein L19 OS=Escherichia coli (str... [more]
RL19_ECOLU6.679e-1340.0050S ribosomal protein L19 OS=Escherichia coli O17:... [more]
RL19_ECOLI6.679e-1340.0050S ribosomal protein L19 OS=Escherichia coli (str... [more]
RL19_ECOLC6.679e-1340.0050S ribosomal protein L19 OS=Escherichia coli (str... [more]
RL19_ECOL66.679e-1340.0050S ribosomal protein L19 OS=Escherichia coli O6 G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831999 ID=CF831999; Name=CF831999; organism=Citrus sinensis; type=EST; length=689bp
TTTTAAACAGACCCATTACCTTCATCTCCATATTATTAACCGAGTACATG
CAGCCTTACGCGTATTGATGGAAGAAATGAGCTGTCTCTGGCGCAATGCC
CATGTTCAAATGCATGATCTATAATTACAAAACAAGACCTTTTATGGGTA
ACATTAATGAAGCCAAAATTTTACCACTTCTAGCGGCTTTCTGGGGATTC
CATTCAAGTTTGGAACTCCTTGCCCCTCCCAACCATGCCAGCACAGCAAT
TAACAGAGATGCTAAACTAAACCTTAATTGGAAAAAGAAAGGGTAAAATG
AAAACACAAATAGTTTGTGAAATTTGTCACCAATGCAATACAACCCAACT
ATCCATCACAAGGAACTCACAGAATCCTCCCACCAATAAAGCTTCTTATT
TATTTCTAAGTGGATTCAGCTTATCCCTCAGATAGTAAAGCTTGGCCCTC
CTCACTTTCTTCTTGTCCAGCACCTTTATTTCTAGTATATTAGGTGAGTA
CAAAGGGAAAAGAGATTCGACTCCAACCCCTGCNACCAGCCTCCTCAATC
TAAATGTAGTACTTATACCAGCATTACGCCTTGCTATAACAATACCCTTT
AAAGTTGAAACACGTCTCTTGTTCTCTGGAATTACCACTTTTAGTTGCAC
GATATAACCAGGCTTTATATCGGGGATCTCCCTCTGTGA
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