CF831999

Overview
NameCF831999
Unique NameCF831999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ECOL5 (50S ribosomal protein L19 OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = -1 
Query:  420 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:   14 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103
[Close]
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ECOK1 (50S ribosomal protein L19 OS=Escherichia coli O1:K1 / APEC GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = -1 
Query:  420 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:   14 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103
[Close]
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ECOHS (50S ribosomal protein L19 OS=Escherichia coli O9:H4 (strain HS) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = -1 
Query:  420 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:   14 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103
[Close]
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ECODH (50S ribosomal protein L19 OS=Escherichia coli (strain K12 / DH10B) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = -1 
Query:  420 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:   14 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103
[Close]
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ECOBW (50S ribosomal protein L19 OS=Escherichia coli (strain K12 / BW2952) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = -1 
Query:  420 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:   14 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103
[Close]
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ECO8A (50S ribosomal protein L19 OS=Escherichia coli O8 (strain IAI1) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = -1 
Query:  420 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:   14 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103
[Close]
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ECO81 (50S ribosomal protein L19 OS=Escherichia coli O81 (strain ED1a) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = -1 
Query:  420 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:   14 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103
[Close]
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ECO7I (50S ribosomal protein L19 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = -1 
Query:  420 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:   14 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103
[Close]
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ECO5E (50S ribosomal protein L19 OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = -1 
Query:  420 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:   14 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103
[Close]
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ECO57 (50S ribosomal protein L19 OS=Escherichia coli O157:H7 GN=rplS PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = -1 
Query:  420 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:   14 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103
The following BLAST results are available for this feature:
BLAST of CF831999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_ECOL56.679e-1340.0050S ribosomal protein L19 OS=Escherichia coli O6:K... [more]
RL19_ECOK16.679e-1340.0050S ribosomal protein L19 OS=Escherichia coli O1:K... [more]
RL19_ECOHS6.679e-1340.0050S ribosomal protein L19 OS=Escherichia coli O9:H... [more]
RL19_ECODH6.679e-1340.0050S ribosomal protein L19 OS=Escherichia coli (str... [more]
RL19_ECOBW6.679e-1340.0050S ribosomal protein L19 OS=Escherichia coli (str... [more]
RL19_ECO8A6.679e-1340.0050S ribosomal protein L19 OS=Escherichia coli O8 (... [more]
RL19_ECO816.679e-1340.0050S ribosomal protein L19 OS=Escherichia coli O81 ... [more]
RL19_ECO7I6.679e-1340.0050S ribosomal protein L19 OS=Escherichia coli O7:K... [more]
RL19_ECO5E6.679e-1340.0050S ribosomal protein L19 OS=Escherichia coli O157... [more]
RL19_ECO576.679e-1340.0050S ribosomal protein L19 OS=Escherichia coli O157... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831999 ID=CF831999; Name=CF831999; organism=Citrus sinensis; type=EST; length=689bp
TTTTAAACAGACCCATTACCTTCATCTCCATATTATTAACCGAGTACATG
CAGCCTTACGCGTATTGATGGAAGAAATGAGCTGTCTCTGGCGCAATGCC
CATGTTCAAATGCATGATCTATAATTACAAAACAAGACCTTTTATGGGTA
ACATTAATGAAGCCAAAATTTTACCACTTCTAGCGGCTTTCTGGGGATTC
CATTCAAGTTTGGAACTCCTTGCCCCTCCCAACCATGCCAGCACAGCAAT
TAACAGAGATGCTAAACTAAACCTTAATTGGAAAAAGAAAGGGTAAAATG
AAAACACAAATAGTTTGTGAAATTTGTCACCAATGCAATACAACCCAACT
ATCCATCACAAGGAACTCACAGAATCCTCCCACCAATAAAGCTTCTTATT
TATTTCTAAGTGGATTCAGCTTATCCCTCAGATAGTAAAGCTTGGCCCTC
CTCACTTTCTTCTTGTCCAGCACCTTTATTTCTAGTATATTAGGTGAGTA
CAAAGGGAAAAGAGATTCGACTCCAACCCCTGCNACCAGCCTCCTCAATC
TAAATGTAGTACTTATACCAGCATTACGCCTTGCTATAACAATACCCTTT
AAAGTTGAAACACGTCTCTTGTTCTCTGGAATTACCACTTTTAGTTGCAC
GATATAACCAGGCTTTATATCGGGGATCTCCCTCTGTGA
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