CF831999

Overview
NameCF831999
Unique NameCF831999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ECO55 (50S ribosomal protein L19 OS=Escherichia coli (strain 55989 / EAEC) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = -1
Query:  420 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:   14 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ECO45 (50S ribosomal protein L19 OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = -1
Query:  420 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:   14 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ECO27 (50S ribosomal protein L19 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = -1
Query:  420 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:   14 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ECO24 (50S ribosomal protein L19 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = -1
Query:  420 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:   14 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRER 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_CLOCE (50S ribosomal protein L19 OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 38/89 (42.70%), Postives = 58/89 (65.17%), Query Frame = -1
Query:  417 EIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 680
            ++P ++ G  +++   I E  R R+   +G VIA + +G+  TF +RR+  GVGVE +FP+ SP +  I V+ K  VRRAKLYYLRD++
Sbjct:   15 DLPKLEIGDFIKVHAKIKEGTRERIQVFEGTVIALKGSGLKETFTVRRISYGVGVERVFPVNSPRVDRIDVVRKGVVRRAKLYYLRDRV 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_CHLPD (50S ribosomal protein L19 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 40/91 (43.96%), Postives = 58/91 (63.74%), Query Frame = -1
Query:  420 SQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 689
            ++ + P I PG  V++++ VI   K R+   +G+VI+ R AG S T  +R++  GVGVE + P+ SPNI  I VL   K RRAKL+YLR +
Sbjct:   13 ARNDFPAINPGDTVKIQLKVIEGEKERLQAFEGVVISDRGAGGSKTITVRKISHGVGVERIIPVNSPNIESITVLKHGKARRAKLFYLRKR 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_CHLAD (50S ribosomal protein L19 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 41/89 (46.07%), Postives = 60/89 (67.42%), Query Frame = -1
Query:  420 EIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVA-GVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 680
            +IP+ + G  V++ V + E N+ RV   +G+VI RR  GI+  F +RR+ + G+GVE  F L++P I  IKV+ + KVRRAKLYYLR +
Sbjct:   17 DIPEFRVGDTVRVGVKVVEGNRERVQDFEGVVIRRRGEGINENFTVRRIASHGIGVERTFLLHAPRIDYIKVIRQGKVRRAKLYYLRGR 105          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_BURVG (50S ribosomal protein L19 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = -1
Query:  420 REIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 683
            + IP+  PG  V + V V+  N++RV   +G+VIA RN G+++ F +R++ +G GVE  F  YSP +  I V  +  VRRAKLYYLR++
Sbjct:   19 KTIPEFAPGDTVIVNVNVVEGNRKRVQAYEGVVIAIRNRGLNSNFIVRKISSGEGVERTFQTYSPLLASIVVKRRGDVRRAKLYYLRER 107          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_BURA4 (50S ribosomal protein L19 OS=Burkholderia ambifaria (strain MC40-6) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = -1
Query:  420 REIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 683
            + IP+  PG  V + V V+  N++RV   +G+VIA RN G+++ F +R++ +G GVE  F  YSP +  I V  +  VRRAKLYYLR++
Sbjct:   19 KTIPEFAPGDTVIVNVNVVEGNRKRVQAYEGVVIAIRNRGLNSNFIVRKISSGEGVERTFQTYSPLLASIVVKRRGDVRRAKLYYLRER 107          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RK19_NEPOL (50S ribosomal protein L19, chloroplastic OS=Nephroselmis olivacea GN=rpl19 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 37/90 (41.11%), Postives = 62/90 (68.89%), Query Frame = -1
Query:  417 REIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDKL 683
            R +P I  G +V++ ++I E +K RV T +G VI++  AG+++T  +R+   GVG+E +F LYSP ++ ++ +   K RRAKLYYLR+++
Sbjct:   15 RPLPAIAVGDLVKVGLLILEGDKERVQTYEGTVISKHRAGLNSTITVRKTFQGVGIERVFCLYSPRMVFVEFIRHSKARRAKLYYLRNRV 104          
The following BLAST results are available for this feature:
BLAST of CF831999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_ECO556.679e-1340.0050S ribosomal protein L19 OS=Escherichia coli (str... [more]
RL19_ECO456.679e-1340.0050S ribosomal protein L19 OS=Escherichia coli O45:... [more]
RL19_ECO276.679e-1340.0050S ribosomal protein L19 OS=Escherichia coli O127... [more]
RL19_ECO246.679e-1340.0050S ribosomal protein L19 OS=Escherichia coli O139... [more]
RL19_CLOCE6.679e-1342.7050S ribosomal protein L19 OS=Clostridium celluloly... [more]
RL19_CHLPD6.679e-1343.9650S ribosomal protein L19 OS=Chlorobium phaeobacte... [more]
RL19_CHLAD6.679e-1346.0750S ribosomal protein L19 OS=Chloroflexus aggregan... [more]
RL19_BURVG6.679e-1343.8250S ribosomal protein L19 OS=Burkholderia vietnami... [more]
RL19_BURA46.679e-1343.8250S ribosomal protein L19 OS=Burkholderia ambifari... [more]
RK19_NEPOL6.679e-1341.1150S ribosomal protein L19, chloroplastic OS=Nephro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831999 ID=CF831999; Name=CF831999; organism=Citrus sinensis; type=EST; length=689bp
TTTTAAACAGACCCATTACCTTCATCTCCATATTATTAACCGAGTACATG
CAGCCTTACGCGTATTGATGGAAGAAATGAGCTGTCTCTGGCGCAATGCC
CATGTTCAAATGCATGATCTATAATTACAAAACAAGACCTTTTATGGGTA
ACATTAATGAAGCCAAAATTTTACCACTTCTAGCGGCTTTCTGGGGATTC
CATTCAAGTTTGGAACTCCTTGCCCCTCCCAACCATGCCAGCACAGCAAT
TAACAGAGATGCTAAACTAAACCTTAATTGGAAAAAGAAAGGGTAAAATG
AAAACACAAATAGTTTGTGAAATTTGTCACCAATGCAATACAACCCAACT
ATCCATCACAAGGAACTCACAGAATCCTCCCACCAATAAAGCTTCTTATT
TATTTCTAAGTGGATTCAGCTTATCCCTCAGATAGTAAAGCTTGGCCCTC
CTCACTTTCTTCTTGTCCAGCACCTTTATTTCTAGTATATTAGGTGAGTA
CAAAGGGAAAAGAGATTCGACTCCAACCCCTGCNACCAGCCTCCTCAATC
TAAATGTAGTACTTATACCAGCATTACGCCTTGCTATAACAATACCCTTT
AAAGTTGAAACACGTCTCTTGTTCTCTGGAATTACCACTTTTAGTTGCAC
GATATAACCAGGCTTTATATCGGGGATCTCCCTCTGTGA
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