CF831999

Overview
NameCF831999
Unique NameCF831999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_SYNAS (50S ribosomal protein L19 OS=Syntrophus aciditrophicus (strain SB) GN=rplS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13
Identity = 35/86 (40.70%), Postives = 58/86 (67.44%), Query Frame = -1
Query:  426 EIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLR 680
            +IPD +PG  V++ + +I   K+R+   +GIVI ++      +F +R++  G+GVE  FP++SP+I  I V+ + +VRRA+LYYLR
Sbjct:   15 DIPDFRPGDTVRVHIRIIEGQKQRIQAFEGIVIRKKGGLSQASFTVRKISYGIGVEKTFPIHSPSIDRIDVVTRGRVRRARLYYLR 100          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_SULNB (50S ribosomal protein L19 OS=Sulfurovum sp. (strain NBC37-1) GN=rplS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = -1
Query:  423 REIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAG-VGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 683
            R IP+ + G  V++ V I E +K RV   +G+ IA R  G   TF +R++ A  VGVE +FPLYS +I  I+VL K +VRRAKL+YLR+
Sbjct:   17 RNIPEFRAGDTVKVAVRIKEGSKERVQNYEGLCIAIRGQGTGRTFMVRKMGANSVGVERIFPLYSDSIESIEVLRKGRVRRAKLFYLRE 105          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_PROVI (50S ribosomal protein L19 OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=rplS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13
Identity = 38/88 (43.18%), Postives = 56/88 (63.64%), Query Frame = -1
Query:  420 EIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 680
            E PDI PG  V++++ VI   K R+    G+VI+ R AG + T  +R++  GVGVE + P+ SPN+  + VL   K RR+KL+YLR +
Sbjct:   16 ETPDIYPGDSVRIQLRVIEGEKERLQAFDGVVISDRGAGTNKTITVRKISHGVGVERIIPINSPNVESVTVLKHGKARRSKLFYLRKR 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_PHOLL (50S ribosomal protein L19 OS=Photorhabdus luminescens subsp. laumondii GN=rplS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13
Identity = 37/90 (41.11%), Postives = 60/90 (66.67%), Query Frame = -1
Query:  420 QREIPDIKPGYIVQLKVVIPEN-KRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV + E  K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VRRAKLYYLR++
Sbjct:   14 KQDVPSFRPGDSVEVKVWVVEGAKKRLQAFEGVVIAIRNRGLHSAFTVRKVSNGEGVERVFQTHSPVVDSINVKRRGAVRRAKLYYLRER 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_NOCSJ (50S ribosomal protein L19 OS=Nocardioides sp. (strain BAA-499 / JS614) GN=rplS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13
Identity = 37/87 (42.53%), Postives = 59/87 (67.82%), Query Frame = -1
Query:  423 EIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRD 680
            ++PD + G  V++ V + E N+ RV   +G+VI  + +G+  +F +R++  GVGVE  FPL+SP   +I+V+ +  VRRAKLYYLR+
Sbjct:   16 DLPDFRSGDTVKVHVKVVEGNRSRVQIFQGVVIRLQGSGVGRSFTVRKVSFGVGVERTFPLHSPIFEQIEVVTRGDVRRAKLYYLRN 102          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_LEPCP (50S ribosomal protein L19 OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=rplS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13
Identity = 39/87 (44.83%), Postives = 58/87 (66.67%), Query Frame = -1
Query:  420 IPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 677
            IP   PG  V + V V+   ++R+   +G+VIA+RN G++++F +R++ +G GVE  F LYSP I  I+V  +  VRRAKLYYLR +
Sbjct:   19 IPVFAPGDTVIVSVNVVEGTRKRLQAYEGVVIAKRNRGLNSSFIVRKISSGEGVERTFQLYSPLIASIEVKRRGDVRRAKLYYLRQR 105          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_KLEP7 (50S ribosomal protein L19 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rplS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = -1
Query:  420 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:   14 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSIAVKRRGAVRKAKLYYLRER 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_KLEP3 (50S ribosomal protein L19 OS=Klebsiella pneumoniae (strain 342) GN=rplS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = -1
Query:  420 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:   14 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSIAVKRRGAVRKAKLYYLRER 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ENTS8 (50S ribosomal protein L19 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=rplS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = -1
Query:  420 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP +  I V  +  VR+AKLYYLR++
Sbjct:   14 KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSIAVKRRGAVRKAKLYYLRER 103          
BLAST of CF831999 vs. ExPASy Swiss-Prot
Match: RL19_ENT38 (50S ribosomal protein L19 OS=Enterobacter sp. (strain 638) GN=rplS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13
Identity = 37/90 (41.11%), Postives = 60/90 (66.67%), Query Frame = -1
Query:  420 QREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPLYSPNILEIKVLDKKKVRRAKLYYLRDK 686
            ++++P  +PG  V++KV V+   K+R+   +G+VIA RN G+ + F +R++  G GVE +F  +SP I  I V  +  VR+AKLYYLR++
Sbjct:   14 KQDVPSFRPGDSVEVKVWVVEGTKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVIDSISVKRRGAVRKAKLYYLRER 103          
The following BLAST results are available for this feature:
BLAST of CF831999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL19_SYNAS8.723e-1340.7050S ribosomal protein L19 OS=Syntrophus aciditroph... [more]
RL19_SULNB8.723e-1348.3150S ribosomal protein L19 OS=Sulfurovum sp. (strai... [more]
RL19_PROVI8.723e-1343.1850S ribosomal protein L19 OS=Prosthecochloris vibr... [more]
RL19_PHOLL8.723e-1341.1150S ribosomal protein L19 OS=Photorhabdus luminesc... [more]
RL19_NOCSJ8.723e-1342.5350S ribosomal protein L19 OS=Nocardioides sp. (str... [more]
RL19_LEPCP8.723e-1344.8350S ribosomal protein L19 OS=Leptothrix cholodnii ... [more]
RL19_KLEP78.723e-1340.0050S ribosomal protein L19 OS=Klebsiella pneumoniae... [more]
RL19_KLEP38.723e-1340.0050S ribosomal protein L19 OS=Klebsiella pneumoniae... [more]
RL19_ENTS88.723e-1340.0050S ribosomal protein L19 OS=Enterobacter sakazaki... [more]
RL19_ENT388.723e-1341.1150S ribosomal protein L19 OS=Enterobacter sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831999 ID=CF831999; Name=CF831999; organism=Citrus sinensis; type=EST; length=689bp
TTTTAAACAGACCCATTACCTTCATCTCCATATTATTAACCGAGTACATG
CAGCCTTACGCGTATTGATGGAAGAAATGAGCTGTCTCTGGCGCAATGCC
CATGTTCAAATGCATGATCTATAATTACAAAACAAGACCTTTTATGGGTA
ACATTAATGAAGCCAAAATTTTACCACTTCTAGCGGCTTTCTGGGGATTC
CATTCAAGTTTGGAACTCCTTGCCCCTCCCAACCATGCCAGCACAGCAAT
TAACAGAGATGCTAAACTAAACCTTAATTGGAAAAAGAAAGGGTAAAATG
AAAACACAAATAGTTTGTGAAATTTGTCACCAATGCAATACAACCCAACT
ATCCATCACAAGGAACTCACAGAATCCTCCCACCAATAAAGCTTCTTATT
TATTTCTAAGTGGATTCAGCTTATCCCTCAGATAGTAAAGCTTGGCCCTC
CTCACTTTCTTCTTGTCCAGCACCTTTATTTCTAGTATATTAGGTGAGTA
CAAAGGGAAAAGAGATTCGACTCCAACCCCTGCNACCAGCCTCCTCAATC
TAAATGTAGTACTTATACCAGCATTACGCCTTGCTATAACAATACCCTTT
AAAGTTGAAACACGTCTCTTGTTCTCTGGAATTACCACTTTTAGTTGCAC
GATATAACCAGGCTTTATATCGGGGATCTCCCTCTGTGA
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