CF832372

Overview
NameCF832372
Unique NameCF832372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: TYDC1_ORYSJ (Tyrosine decarboxylase 1 OS=Oryza sativa subsp. japonica GN=Os07g0437500 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.586e-26
Identity = 60/144 (41.67%), Postives = 86/144 (59.72%), Query Frame = -3
Query:  272 VVDYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYVNCLFSGGGQINEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGW 703
            VVD+KDWQI L  RFRSLKLW V+R YG  NL+ ++  H+++A+ FE+L+  D RFE+V P  F+ VCFR+ P                 S      + N +++  +N+ GK +++H VL G + +RFA G  LTE+RHV   W
Sbjct:  354 VVDFKDWQIPLGRRFRSLKLWMVLRLYGVDNLQSYIRKHIHLAEHFEQLLLSDSRFEVVTPRTFSLVCFRLVPPT---------------SDHENGRKLNYDMMDGVNSSGKIFLSHTVLSGKFVLRFAVGAPLTEERHVDAAW 482          
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: TYDC1_PETCR (Tyrosine decarboxylase 1 (Fragment) OS=Petroselinum crispum GN=TYRDC-1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.424e-21
Identity = 54/109 (49.54%), Postives = 69/109 (63.30%), Query Frame = -3
Query:  380 QVVDYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYVNCLFSGGGQINEFNGELLGWIN 706
            +VVDYKDWQI LS RFR+LKLWFV+R+YG   LR F+  HV MAK FE LV  D RFE+V P  F+ VCFR+ PS ++             +   ++NE N +LL  +N
Sbjct:  333 KVVDYKDWQIMLSRRFRALKLWFVLRSYGVGQLREFIRGHVGMAKYFEGLVGMDNRFEVVAPRLFSMVCFRIKPSAMIGK-----------NDEDEVNEINRKLLESVN 430          
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: DDC_MANSE (Aromatic-L-amino-acid decarboxylase OS=Manduca sexta GN=Ddc PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.638e-19
Identity = 55/155 (35.48%), Postives = 78/155 (50.32%), Query Frame = -3
Query:  233 DYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYVNCLFSGGGQINEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGWTGVQQPLEAFQRA 697
            DY+ WQI L  RFRSLKLWFV+R YG  NL+ ++   +  A LFERL++ D+RFE+        VCFR+  S                      NE N ELL  IN  GK ++  + +  +Y +R A     TE+  + V W  ++  L  F ++
Sbjct:  343 DYRHWQIPLGRRFRSLKLWFVLRLYGVENLQKYIRKQIGFAHLFERLLTSDERFELFEEVTMGLVCFRLKGS----------------------NEINEELLRRINGRGKIHLVPSKVDDVYFLRLAICSRFTEESDMHVSWEEIKDRLMMFLKS 475          
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: DDC_MOUSE (Aromatic-L-amino-acid decarboxylase OS=Mus musculus GN=Ddc PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.012e-16
Identity = 54/159 (33.96%), Postives = 71/159 (44.65%), Query Frame = -3
Query:  227 VVDYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYVNCLFSGGGQINEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGWTGVQQPLEAFQRAFK 703
            + DY+ WQI L  RFRSLK+WFV R YG   L+ ++  HV ++  FE LV  D RFEI        VCFR+  S                      NE N  LL  IN+  K ++    L   + +RFA      E  HV + W  +     +  RA K
Sbjct:  343 ITDYRHWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVELSHEFESLVRQDPRFEICTEVILGLVCFRLKGS----------------------NELNETLLQRINSAKKIHLVPCRLRDKFVLRFAVCARTVESAHVQLAWEHISDLASSVLRAEK 479          
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: DDC_RAT (Aromatic-L-amino-acid decarboxylase OS=Rattus norvegicus GN=Ddc PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.167e-15
Identity = 53/159 (33.33%), Postives = 72/159 (45.28%), Query Frame = -3
Query:  227 VVDYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYVNCLFSGGGQINEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGWTGVQQPLEAFQRAFK 703
            + DY+ WQI L  RFRSLK+WFV R YG   L+ ++  HV ++  FE LV  D RFEI        VCFR+  S                      N+ N  LL  IN+  K ++    L   + +RFA      E  HV + W  ++    +  RA K
Sbjct:  343 ITDYRHWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVKLSHEFESLVRQDPRFEICTEVILGLVCFRLKGS----------------------NQLNETLLQRINSAKKIHLVPCRLRDKFVLRFAVCSRTVESAHVQLAWEHIRDLASSVLRAEK 479          
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: DDC_BOVIN (Aromatic-L-amino-acid decarboxylase OS=Bos taurus GN=DDC PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.167e-15
Identity = 52/157 (33.12%), Postives = 71/157 (45.22%), Query Frame = -3
Query:  233 VVDYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYVNCLFSGGGQINEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGWTGVQQPLEAFQRA 703
            + DY+ WQ+ L  RFRSLK+WFV R YG   L+ ++  HV ++  FE LV  D RFEI        VCFR+  S                      N+ N  LL  IN+  K ++    L   + +RFA      E  HV + W  +Q+      RA
Sbjct:  343 ITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHAFEALVRQDTRFEICAEVILGLVCFRLKGS----------------------NKLNEALLESINSAKKIHLVPCSLRDRFVLRFAICSRTVELAHVQLAWEHIQEMAATVLRA 477          
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: DDC_HUMAN (Aromatic-L-amino-acid decarboxylase OS=Homo sapiens GN=DDC PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 50/149 (33.56%), Postives = 68/149 (45.64%), Query Frame = -3
Query:  257 VVDYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYVNCLFSGGGQINEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGWTGVQQ 703
            + DY+ WQI L  RFRSLK+WFV R YG   L+ ++  HV ++  FE LV  D RFEI        VCFR+  S                      N+ N  LL  IN+  K ++    L   + +RFA      E  HV   W  +++
Sbjct:  343 ITDYRHWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLKGS----------------------NKVNEALLQRINSAKKIHLVPCHLRDKFVLRFAICSRTVESAHVQRAWEHIKE 469          
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: DDC_CAVPO (Aromatic-L-amino-acid decarboxylase OS=Cavia porcellus GN=DDC PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 51/149 (34.23%), Postives = 66/149 (44.30%), Query Frame = -3
Query:  257 VVDYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYVNCLFSGGGQINEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGWTGVQQ 703
            + DY+ WQI L  RFRSLK+WFV R YG   L+  +  HV +A  FE LV  D RFEI        VCFR+  S                      N+ N  LL  IN+  K ++    L   + +RF       E  HV   W  ++Q
Sbjct:  343 ITDYRHWQIPLGRRFRSLKMWFVFRMYGIKGLQAHIRKHVQLAHEFESLVRQDPRFEICMEVTLGLVCFRLKGS----------------------NQLNETLLKRINSARKIHLVPCHLRDKFVLRFRICSRQVESDHVQQAWQHIRQ 469          
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: DDC_DROSI (Aromatic-L-amino-acid decarboxylase OS=Drosophila simulans GN=Ddc PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 50/154 (32.47%), Postives = 68/154 (44.16%), Query Frame = -3
Query:  236 DYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYVNCLFSGGGQINEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGWTGVQQPLEAFQR 697
            DY+ WQI L  RFR+LKLWFV+R YG  NL+  +  H N AK F  L   D RFE+    +   VCFR+  S                      NE N  LL  IN  G  ++  A +  +Y +R A     T+   +   W  V    +  ++
Sbjct:  377 DYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGS----------------------NERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEMEQ 508          
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: DDC_DROME (Aromatic-L-amino-acid decarboxylase OS=Drosophila melanogaster GN=Ddc PE=1 SV=4)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 50/154 (32.47%), Postives = 68/154 (44.16%), Query Frame = -3
Query:  236 DYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYVNCLFSGGGQINEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGWTGVQQPLEAFQR 697
            DY+ WQI L  RFR+LKLWFV+R YG  NL+  +  H N AK F  L   D RFE+    +   VCFR+  S                      NE N  LL  IN  G  ++  A +  +Y +R A     T+   +   W  V    +  ++
Sbjct:  377 DYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGS----------------------NERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEMEQ 508          
The following BLAST results are available for this feature:
BLAST of CF832372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
TYDC1_ORYSJ5.586e-2641.67Tyrosine decarboxylase 1 OS=Oryza sativa subsp. ja... [more]
TYDC1_PETCR1.424e-2149.54Tyrosine decarboxylase 1 (Fragment) OS=Petroselinu... [more]
DDC_MANSE8.638e-1935.48Aromatic-L-amino-acid decarboxylase OS=Manduca sex... [more]
DDC_MOUSE4.012e-1633.96Aromatic-L-amino-acid decarboxylase OS=Mus musculu... [more]
DDC_RAT1.167e-1533.33Aromatic-L-amino-acid decarboxylase OS=Rattus norv... [more]
DDC_BOVIN1.167e-1533.12Aromatic-L-amino-acid decarboxylase OS=Bos taurus ... [more]
DDC_HUMAN1.291e-1433.56Aromatic-L-amino-acid decarboxylase OS=Homo sapien... [more]
DDC_CAVPO1.686e-1434.23Aromatic-L-amino-acid decarboxylase OS=Cavia porce... [more]
DDC_DROSI2.202e-1432.47Aromatic-L-amino-acid decarboxylase OS=Drosophila ... [more]
DDC_DROME2.202e-1432.47Aromatic-L-amino-acid decarboxylase OS=Drosophila ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832372 ID=CF832372; Name=CF832372; organism=Citrus sinensis; type=EST; length=711bp
TTTTTTTTTTTTTTTTTAACCAAAGCACGGGAATTTGGGCCCACAAGTTC
GGCCTTTTTTGTTTTTTTTCCTTGGACAAGGGTTTTAACTTTTAACGGGA
GGATCTAAAGGGACAGGCCGAACTCTATCTGCATCTGGCGGACTTTTTAG
CTGCATTTCCAGCCAATGCATTTCCTTCTGTCTTCCCCCAGTTCAAATAG
CTGCATTTCCACCCCATAACTTAGGGTTTAAATGCCCTTTGAAAAGCTTC
CAAGGGCTGTTGCACCCCCGTCCACCCCACCACTACGTGTCGTTTCTCTG
TCAACGTAACACCAGGGGCAAATCGTATGGCGTAAATTCCCCCCAAAACG
GCATGGGTCATGTATGCTTTTCCAAATGCATTAATCCACCCCAGTAATTC
CCCATTGAATTCGTTTATTTGTCCCCCCCCCGAAAACAAACAATTTACGT
ATTTGGTTTTAAGTTTATCCATGAGTACTGGGGATGGCGAAACCCTAAAG
CAAACCCCGGCAAAATGACAGGGAAACACAATTTCAAACCTCTTATCACC
GCTTACAAGCCTTTCAAAAAGCTTGGCCATGTTTACATGGCTGCAAAGGA
AGTGCCTTAAATTTGCCCCGCCATAGTTTCTTATCACAAACCATAGTTTC
AGCGAACGAAATCTTCCACTCAAAGTTATTTGCCAATCTTTGTAATCCAC
CACTTGCATCC
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