CF832372

Overview
NameCF832372
Unique NameCF832372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: DDC_PIG (Aromatic-L-amino-acid decarboxylase OS=Sus scrofa GN=DDC PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 48/148 (32.43%), Postives = 67/148 (45.27%), Query Frame = -3
Query:  260 VVDYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYVNCLFSGGGQINEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGWTGVQ 703
            + DY+ WQ+ L  RFRSLK+WFV R YG   L+ ++  HV ++  FE  V  D RFE+        VCFR+  S  L                      N  LL  IN+  K ++    L G + +RFA      E  HV + W  ++
Sbjct:  343 ITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGL----------------------NEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIR 468          
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: DCHS_DROME (Histidine decarboxylase OS=Drosophila melanogaster GN=Hdc PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13
Identity = 50/148 (33.78%), Postives = 68/148 (45.95%), Query Frame = -3
Query:  257 VDYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYVNCLFSGGGQINEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGWTGVQQ 700
            VD+  WQI LS RFR+LK+WFV+R+YG   L+  +   V +A+ FE LV  D RFE+    H   V FR+                         NE   +LL  +N  G  +   + L G Y IRF    T T    +V  W  ++Q
Sbjct:  343 VDFMHWQIPLSRRFRALKVWFVLRSYGIKGLQRHIREGVRLAQKFEALVLADHRFELPAKRHLGLVVFRIRGD----------------------NEITEKLLKRLNHRGNLHCIPSSLKGQYVIRFTITSTHTTLDDIVKDWMEIRQ 468          
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: DDC_DROLE (Aromatic-L-amino-acid decarboxylase (Fragment) OS=Drosophila lebanonensis GN=Ddc PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 48/145 (33.10%), Postives = 64/145 (44.14%), Query Frame = -3
Query:  263 DYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYVNCLFSGGGQINEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGWTGV 697
            DY+ WQI +  RFR+LKLWFV+R YG  NL+  +  H   A+ F  L   D RFE+    +   VCFR+  S                      NE N  LL  IN  GK ++  A +  +Y +R A     T    +   W  V
Sbjct:  269 DYRHWQIPIGRRFRALKLWFVLRLYGVENLQAHIRRHCTYAQQFAELCVQDSRFELAAEVNMGLVCFRLKGS----------------------NERNEALLKRINGRGKIHLVPAKIRDVYFLRMAVCSRFTRPEDMEYSWQEV 391          
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: L2AM_DROME (Alpha-methyldopa hypersensitive protein OS=Drosophila melanogaster GN=amd PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 48/156 (30.77%), Postives = 66/156 (42.31%), Query Frame = -3
Query:  239 QVVDYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYVNCLFSGGGQINEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGWTGVQQPLEAFQ 706
            Q+ D++ WQI L  RFR+LK+W   R  G   LR+ +  H+ +AK FE+LV  D RFE+V P     VCFR                          NE   +LL  +    K YM  A   G   +RF      T+   +   W  ++  L   Q
Sbjct:  342 QIPDFRHWQIPLGRRFRALKVWITFRTLGAEGLRNHVRKHIELAKQFEQLVLKDSRFELVAPRALGLVCFRPKGD----------------------NEITTQLLQRLMDRKKIYMVKAEHAGRQFLRFVVCGMDTKASDIDFAWQEIESQLTDLQ 475          
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: L2AM_DROLE (Alpha-methyldopa hypersensitive protein (Fragment) OS=Drosophila lebanonensis GN=amd PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 48/154 (31.17%), Postives = 63/154 (40.91%), Query Frame = -3
Query:  245 QVVDYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYVNCLFSGGGQINEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGWTGVQQPLEA 706
            Q+ D++ WQI L  RFR+LK+W   R  G   LR  +  H+ +AK FE  V  D RFE+V P     VCFR                          NE   +LL  +    K YM  A   G   +RFA      +   +   WT +   L A
Sbjct:  271 QIPDFRHWQIPLGRRFRALKVWITFRTLGAEGLRAHVRKHIELAKKFEVFVLADARFELVAPRALGLVCFRAKGE----------------------NEITAQLLQRLMERKKIYMVKAEHRGQLFLRFAVCGMDPKPSDIEFAWTEIGTQLTA 402          
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: DCHS_MOUSE (Histidine decarboxylase OS=Mus musculus GN=Hdc PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 50/147 (34.01%), Postives = 66/147 (44.90%), Query Frame = -3
Query:  257 DYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYVNCLFSGGGQINEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGWTGVQQ 697
            D+  WQI LS RFRS+KLWFVIR++G  NL+  +     MAK FE LV  D  FEI    H   V FR+            K  NCL             +L  I   G+ ++  A +     IRF      T K  ++  W  +Q+
Sbjct:  352 DFMHWQIPLSRRFRSIKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRSDPSFEIPAKRHLGLVVFRL------------KGPNCL----------TESVLKEIAKAGQLFLIPATIQDKLIIRFTVTSQFTTKEDILRDWHLIQE 476          
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: DCHS_RAT (Histidine decarboxylase OS=Rattus norvegicus GN=Hdc PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 49/147 (33.33%), Postives = 67/147 (45.58%), Query Frame = -3
Query:  257 DYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYVNCLFSGGGQINEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGWTGVQQ 697
            D+  WQI LS RFRS+KLWFVIR++G  NL+  +    +MAK FE LV  D  FEI    H   V FR+            K  NCL             +L  I   G+ ++  A +     IRF      T K  ++  W  +++
Sbjct:  348 DFMHWQIPLSRRFRSIKLWFVIRSFGVKNLQAHVRHGTDMAKYFESLVRSDPVFEIPAERHLGLVVFRL------------KGPNCL----------TESVLKEIAKTGQVFLIPATIQDKLIIRFTVTSQFTTKDDILRDWNLIRE 472          
BLAST of CF832372 vs. ExPASy Swiss-Prot
Match: DCHS_BOVIN (Histidine decarboxylase OS=Bos taurus GN=HDC PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 49/146 (33.56%), Postives = 65/146 (44.52%), Query Frame = -3
Query:  260 DYKDWQITLSGRFRSLKLWFVIRNYGGANLRHFLCSHVNMAKLFERLVSGDKRFEIVFPCHFAGVCFRVSPSPVLMDKLKTKYVNCLFSGGGQINEFNGELLGWINAFGKAYMTHAVLGGIYAIRFAPGVTLTEKRHVVVGWTGVQ 697
            D+  WQI LS RFRS+KLWFVIR++G  NL+  +     MAK FE LV  D  FEI    H   V FR+            K  NCL             +L  I   G+ ++  A +     IRF      T +  ++  W  +Q
Sbjct:  345 DFMHWQIPLSRRFRSIKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPFFEIPAKRHLGLVVFRL------------KGPNCL----------TESVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIQ 468          
The following BLAST results are available for this feature:
BLAST of CF832372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
DDC_PIG1.093e-1332.43Aromatic-L-amino-acid decarboxylase OS=Sus scrofa ... [more]
DCHS_DROME1.864e-1333.78Histidine decarboxylase OS=Drosophila melanogaster... [more]
DDC_DROLE2.434e-1333.10Aromatic-L-amino-acid decarboxylase (Fragment) OS=... [more]
L2AM_DROME1.208e-1230.77Alpha-methyldopa hypersensitive protein OS=Drosoph... [more]
L2AM_DROLE5.996e-1231.17Alpha-methyldopa hypersensitive protein (Fragment)... [more]
DCHS_MOUSE1.023e-1134.01Histidine decarboxylase OS=Mus musculus GN=Hdc PE=... [more]
DCHS_RAT2.976e-1133.33Histidine decarboxylase OS=Rattus norvegicus GN=Hd... [more]
DCHS_BOVIN5.076e-1133.56Histidine decarboxylase OS=Bos taurus GN=HDC PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832372 ID=CF832372; Name=CF832372; organism=Citrus sinensis; type=EST; length=711bp
TTTTTTTTTTTTTTTTTAACCAAAGCACGGGAATTTGGGCCCACAAGTTC
GGCCTTTTTTGTTTTTTTTCCTTGGACAAGGGTTTTAACTTTTAACGGGA
GGATCTAAAGGGACAGGCCGAACTCTATCTGCATCTGGCGGACTTTTTAG
CTGCATTTCCAGCCAATGCATTTCCTTCTGTCTTCCCCCAGTTCAAATAG
CTGCATTTCCACCCCATAACTTAGGGTTTAAATGCCCTTTGAAAAGCTTC
CAAGGGCTGTTGCACCCCCGTCCACCCCACCACTACGTGTCGTTTCTCTG
TCAACGTAACACCAGGGGCAAATCGTATGGCGTAAATTCCCCCCAAAACG
GCATGGGTCATGTATGCTTTTCCAAATGCATTAATCCACCCCAGTAATTC
CCCATTGAATTCGTTTATTTGTCCCCCCCCCGAAAACAAACAATTTACGT
ATTTGGTTTTAAGTTTATCCATGAGTACTGGGGATGGCGAAACCCTAAAG
CAAACCCCGGCAAAATGACAGGGAAACACAATTTCAAACCTCTTATCACC
GCTTACAAGCCTTTCAAAAAGCTTGGCCATGTTTACATGGCTGCAAAGGA
AGTGCCTTAAATTTGCCCCGCCATAGTTTCTTATCACAAACCATAGTTTC
AGCGAACGAAATCTTCCACTCAAAGTTATTTGCCAATCTTTGTAATCCAC
CACTTGCATCC
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