CF832434
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832434 vs. ExPASy Swiss-Prot
Match: TOP6B_ARATH (DNA topoisomerase 6 subunit B OS=Arabidopsis thaliana GN=TOP6B PE=1 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 1.053e-80 Identity = 97/114 (85.09%), Postives = 105/114 (92.11%), Query Frame = 1 Query: 214 KALITETSKGTLLQFLQHKFVNIGKSLAERLIGEMGPEFNPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLNPAGEYNLRLCIIKELHPYMVATYSGSAQVFEGHPFIVEAG 555 K LIT+TSK TLLQFLQ++FVNI K+LA RLIGEMGP+F P MAVKS+TSQQ+VRIHQLFRQAKFDDPSG CL+PAGEYNLRL IIKELHP MVATYSGSAQVFEGHPFIVEAG Sbjct: 331 KRLITDTSKKTLLQFLQNEFVNINKTLAARLIGEMGPDFGPSMAVKSVTSQQMVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAG 444 HSP 2 Score: 127.487 bits (319), Expect = 1.053e-80 Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 3 Query: 9 NWTTYRSKILHYLRQMAVITPYAQFLFKFESEVAEKNVTIRFSRRTDVMPPGPVDTKHHPSSVDLLLIK 215 NWTTYRSKILHY+RQMAVITPYAQFLF+F SE EKNVTI+F+RRTDVMPP P++TKHHPSSVDLLLIK Sbjct: 263 NWTTYRSKILHYMRQMAVITPYAQFLFRFISETPEKNVTIKFTRRTDVMPPIPIETKHHPSSVDLLLIK 331
BLAST of CF832434 vs. ExPASy Swiss-Prot
Match: TOP6B_SULSO (Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus solfataricus GN=top6B PE=3 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 1.679e-18 Identity = 35/105 (33.33%), Postives = 62/105 (59.05%), Query Frame = 1 Query: 244 TLLQFLQHKFVNIGKSLAERLIGEMGPEFNPKMAVKSLTSQQIVRIHQLFRQAK-FDDPSGGCLNPAGEYNLRLCIIKELHPYMVATYSGSAQVFEGHPFIVEAG 555 T+ +FL +F +IG + A++++ +G P VK+LT ++I R+ + F++ + F PS L+ GE + L + K +P A+ + + ++GHPFIVEAG Sbjct: 253 TIKEFLMSEFQSIGDTTADKILELVG--LRPNKKVKNLTEEEITRLVETFKKYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFTASITRKPKAYQGHPFIVEAG 355 HSP 2 Score: 50.8322 bits (120), Expect = 1.679e-18 Identity = 31/79 (39.24%), Postives = 44/79 (55.70%), Query Frame = 3 Query: 9 NWTTYRSKILHYLRQMAVITPYAQFLFKFESEVAEKNVTIRFSRRTDVMPPGPVDTKHHPSSVDLLLIKGTYYRNFKRD 245 +W +S+I Y+++ +ITPYA+F+FK E NVT + R T+ +P P + K HP VD IK N KRD Sbjct: 179 DWPKAKSRIYEYIKRTYIITPYAEFIFK----DPEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIK-IMINNLKRD 251
BLAST of CF832434 vs. ExPASy Swiss-Prot
Match: TOP6B_SULSH (Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus shibatae GN=top6B PE=1 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 2.839e-18 Identity = 35/105 (33.33%), Postives = 62/105 (59.05%), Query Frame = 1 Query: 244 TLLQFLQHKFVNIGKSLAERLIGEMGPEFNPKMAVKSLTSQQIVRIHQLFRQAK-FDDPSGGCLNPAGEYNLRLCIIKELHPYMVATYSGSAQVFEGHPFIVEAG 555 T+ +FL ++F +IG + A++++ G P VK+LT ++I R+ + F++ + F PS L+ GE + L + K +P A+ + + ++GHPFIVEAG Sbjct: 253 TIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFKKDEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAG 355 HSP 2 Score: 50.8322 bits (120), Expect = 2.839e-18 Identity = 31/79 (39.24%), Postives = 44/79 (55.70%), Query Frame = 3 Query: 9 NWTTYRSKILHYLRQMAVITPYAQFLFKFESEVAEKNVTIRFSRRTDVMPPGPVDTKHHPSSVDLLLIKGTYYRNFKRD 245 +W +S+I Y+++ +ITPYA+F+FK E NVT + R T+ +P P + K HP VD IK N KRD Sbjct: 179 DWPKAKSRIYEYIKRTYIITPYAEFIFK----DPEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIK-ILINNLKRD 251
BLAST of CF832434 vs. ExPASy Swiss-Prot
Match: TOP6B_SULIY (Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=top6B PE=3 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 2.839e-18 Identity = 35/105 (33.33%), Postives = 62/105 (59.05%), Query Frame = 1 Query: 244 TLLQFLQHKFVNIGKSLAERLIGEMGPEFNPKMAVKSLTSQQIVRIHQLFRQAK-FDDPSGGCLNPAGEYNLRLCIIKELHPYMVATYSGSAQVFEGHPFIVEAG 555 T+ +FL ++F +IG + A++++ G P VK+LT ++I R+ + F++ + F PS L+ GE + L + K +P A+ + + ++GHPFIVEAG Sbjct: 253 TIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFKKYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAG 355 HSP 2 Score: 50.8322 bits (120), Expect = 2.839e-18 Identity = 31/79 (39.24%), Postives = 44/79 (55.70%), Query Frame = 3 Query: 9 NWTTYRSKILHYLRQMAVITPYAQFLFKFESEVAEKNVTIRFSRRTDVMPPGPVDTKHHPSSVDLLLIKGTYYRNFKRD 245 +W +S+I Y+++ +ITPYA+F+FK E NVT + R T+ +P P + K HP VD IK N KRD Sbjct: 179 DWPKAKSRIYEYIKRTYIITPYAEFIFK----DPEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIK-ILINNLKRD 251
BLAST of CF832434 vs. ExPASy Swiss-Prot
Match: TOP6B_SULIN (Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=top6B PE=3 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 2.839e-18 Identity = 35/105 (33.33%), Postives = 62/105 (59.05%), Query Frame = 1 Query: 244 TLLQFLQHKFVNIGKSLAERLIGEMGPEFNPKMAVKSLTSQQIVRIHQLFRQAK-FDDPSGGCLNPAGEYNLRLCIIKELHPYMVATYSGSAQVFEGHPFIVEAG 555 T+ +FL ++F +IG + A++++ G P VK+LT ++I R+ + F++ + F PS L+ GE + L + K +P A+ + + ++GHPFIVEAG Sbjct: 253 TIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFKKYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAG 355 HSP 2 Score: 50.8322 bits (120), Expect = 2.839e-18 Identity = 31/79 (39.24%), Postives = 44/79 (55.70%), Query Frame = 3 Query: 9 NWTTYRSKILHYLRQMAVITPYAQFLFKFESEVAEKNVTIRFSRRTDVMPPGPVDTKHHPSSVDLLLIKGTYYRNFKRD 245 +W +S+I Y+++ +ITPYA+F+FK E NVT + R T+ +P P + K HP VD IK N KRD Sbjct: 179 DWPKAKSRIYEYIKRTYIITPYAEFIFK----DPEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIK-ILINNLKRD 251
BLAST of CF832434 vs. ExPASy Swiss-Prot
Match: TOP6B_SULIM (Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=top6B PE=3 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 2.839e-18 Identity = 35/105 (33.33%), Postives = 62/105 (59.05%), Query Frame = 1 Query: 244 TLLQFLQHKFVNIGKSLAERLIGEMGPEFNPKMAVKSLTSQQIVRIHQLFRQAK-FDDPSGGCLNPAGEYNLRLCIIKELHPYMVATYSGSAQVFEGHPFIVEAG 555 T+ +FL ++F +IG + A++++ G P VK+LT ++I R+ + F++ + F PS L+ GE + L + K +P A+ + + ++GHPFIVEAG Sbjct: 253 TIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFKKYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAG 355 HSP 2 Score: 50.8322 bits (120), Expect = 2.839e-18 Identity = 31/79 (39.24%), Postives = 44/79 (55.70%), Query Frame = 3 Query: 9 NWTTYRSKILHYLRQMAVITPYAQFLFKFESEVAEKNVTIRFSRRTDVMPPGPVDTKHHPSSVDLLLIKGTYYRNFKRD 245 +W +S+I Y+++ +ITPYA+F+FK E NVT + R T+ +P P + K HP VD IK N KRD Sbjct: 179 DWPKAKSRIYEYIKRTYIITPYAEFIFK----DPEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIK-ILINNLKRD 251
BLAST of CF832434 vs. ExPASy Swiss-Prot
Match: TOP6B_SULIL (Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=top6B PE=3 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 2.839e-18 Identity = 35/105 (33.33%), Postives = 62/105 (59.05%), Query Frame = 1 Query: 244 TLLQFLQHKFVNIGKSLAERLIGEMGPEFNPKMAVKSLTSQQIVRIHQLFRQAK-FDDPSGGCLNPAGEYNLRLCIIKELHPYMVATYSGSAQVFEGHPFIVEAG 555 T+ +FL ++F +IG + A++++ G P VK+LT ++I R+ + F++ + F PS L+ GE + L + K +P A+ + + ++GHPFIVEAG Sbjct: 253 TIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFKKYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAG 355 HSP 2 Score: 50.8322 bits (120), Expect = 2.839e-18 Identity = 31/79 (39.24%), Postives = 44/79 (55.70%), Query Frame = 3 Query: 9 NWTTYRSKILHYLRQMAVITPYAQFLFKFESEVAEKNVTIRFSRRTDVMPPGPVDTKHHPSSVDLLLIKGTYYRNFKRD 245 +W +S+I Y+++ +ITPYA+F+FK E NVT + R T+ +P P + K HP VD IK N KRD Sbjct: 179 DWPKAKSRIYEYIKRTYIITPYAEFIFK----DPEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIK-ILINNLKRD 251
BLAST of CF832434 vs. ExPASy Swiss-Prot
Match: TOP6B_SULIK (Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=top6B PE=3 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 2.839e-18 Identity = 35/105 (33.33%), Postives = 62/105 (59.05%), Query Frame = 1 Query: 244 TLLQFLQHKFVNIGKSLAERLIGEMGPEFNPKMAVKSLTSQQIVRIHQLFRQAK-FDDPSGGCLNPAGEYNLRLCIIKELHPYMVATYSGSAQVFEGHPFIVEAG 555 T+ +FL ++F +IG + A++++ G P VK+LT ++I R+ + F++ + F PS L+ GE + L + K +P A+ + + ++GHPFIVEAG Sbjct: 253 TIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFKKYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAG 355 HSP 2 Score: 50.8322 bits (120), Expect = 2.839e-18 Identity = 31/79 (39.24%), Postives = 44/79 (55.70%), Query Frame = 3 Query: 9 NWTTYRSKILHYLRQMAVITPYAQFLFKFESEVAEKNVTIRFSRRTDVMPPGPVDTKHHPSSVDLLLIKGTYYRNFKRD 245 +W +S+I Y+++ +ITPYA+F+FK E NVT + R T+ +P P + K HP VD IK N KRD Sbjct: 179 DWPKAKSRIYEYIKRTYIITPYAEFIFK----DPEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIK-ILINNLKRD 251
BLAST of CF832434 vs. ExPASy Swiss-Prot
Match: TOP6B_SULIA (Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus islandicus (strain M.16.27) GN=top6B PE=3 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 2.839e-18 Identity = 35/105 (33.33%), Postives = 62/105 (59.05%), Query Frame = 1 Query: 244 TLLQFLQHKFVNIGKSLAERLIGEMGPEFNPKMAVKSLTSQQIVRIHQLFRQAK-FDDPSGGCLNPAGEYNLRLCIIKELHPYMVATYSGSAQVFEGHPFIVEAG 555 T+ +FL ++F +IG + A++++ G P VK+LT ++I R+ + F++ + F PS L+ GE + L + K +P A+ + + ++GHPFIVEAG Sbjct: 253 TIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTEEEITRLVETFKKYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAG 355 HSP 2 Score: 50.8322 bits (120), Expect = 2.839e-18 Identity = 31/79 (39.24%), Postives = 44/79 (55.70%), Query Frame = 3 Query: 9 NWTTYRSKILHYLRQMAVITPYAQFLFKFESEVAEKNVTIRFSRRTDVMPPGPVDTKHHPSSVDLLLIKGTYYRNFKRD 245 +W +S+I Y+++ +ITPYA+F+FK E NVT + R T+ +P P + K HP VD IK N KRD Sbjct: 179 DWPKAKSRIYEYIKRTYIITPYAEFIFK----DPEGNVTY-YPRLTNKIPKPPQEVKPHPYGVDREEIK-ILINNLKRD 251
BLAST of CF832434 vs. ExPASy Swiss-Prot
Match: TOP6B_AERPE (Type 2 DNA topoisomerase 6 subunit B OS=Aeropyrum pernix GN=top6B PE=3 SV=2) HSP 1 Score: 56.6102 bits (135), Expect = 7.394e-15 Identity = 32/116 (27.59%), Postives = 56/116 (48.28%), Query Frame = 1 Query: 214 KALITETSKGTLLQFLQHKFVNIGKSLAERLIGEMG--PEFNPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLNPAGEYNLRLCIIKELHPYMVATYSGSAQVFEGHPFIVEAG 555 K+++ T TL +FL +F +IG A+ + + G P+ P+ +K + + R+ + F P L+P G + + + + +P V S S + + GHPFIVE G Sbjct: 268 KSMLRSTRASTLREFLVKEFQSIGDKTAQDFLEKYGLDPDLKPRELLKKGRDKLLRRLADALMEYPFRAPKSDYLSPIGSDIIEIGLRRMFNPEWVGAVSRSPKAYRGHPFIVEVG 383 HSP 2 Score: 45.0542 bits (105), Expect = 7.394e-15 Identity = 23/69 (33.33%), Postives = 37/69 (53.62%), Query Frame = 3 Query: 9 NWTTYRSKILHYLRQMAVITPYAQFLFKFESEVAEKNVTIRFSRRTDVMPPGPVDTKHHPSSVDLLLIK 215 +W+ +SKIL Y+++ AVI PYA+ + + F R T +P P ++K HP VD+ +K Sbjct: 205 DWSRAKSKILEYIKRTAVIAPYAEIILE-----TPDGEIYYFPRSTRKLPKPPRESKPHPHGVDIEQLK 268 The following BLAST results are available for this feature:
BLAST of CF832434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF832434 ID=CF832434; Name=CF832434; organism=Citrus sinensis; type=EST; length=557bpback to top |