CF832726
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD11_ORYSJ (Cyclin-D1-1 OS=Oryza sativa subsp. japonica GN=CYCD1-1 PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20 Identity = 62/164 (37.80%), Postives = 87/164 (53.05%), Query Frame = 2 Query: 17 NGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRXXXXXXXXXGESLDSSAICYQ------------------------RLNEEMVRSCHQLMEEYL 436 +GW QLL VACLSLAAKMEE+ P LLDLQI RF+FEP+T+QRMEL V+ L+WRL S+TPF ++ +F K+ +S G +R L + II + S+ ++A+ + L EE + SC+QL++ L Sbjct: 165 HGWASQLLCVACLSLAAKMEESSAPPLLDLQIEGTRFIFEPRTIQRMELIVLVELDWRLRSVTPFAFVDFFACKVGSS----GRSSRILALRACQIILSAIHELEFLNHCASSMAAAAVLFAVNESPAAMSHRSSVSSESAASWCIGLTEERISSCYQLLQRAL 324
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD12_ORYSJ (Cyclin-D1-2 OS=Oryza sativa subsp. japonica GN=CYCD1-2 PE=3 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 3.393e-20 Identity = 45/75 (60.00%), Postives = 59/75 (78.67%), Query Frame = 2 Query: 17 NGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKL 241 NGW +QLL+V CLSLAAKMEET VP +LDLQ+ D R++FE +T+ RMEL V+ L+WRL SITPF +++ F K+ Sbjct: 156 NGWAMQLLAVTCLSLAAKMEETLVPSILDLQMEDARYIFEHRTIFRMELLVLDALDWRLRSITPFTFMYLFADKV 230
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD33_ARATH (Cyclin-D3-3 OS=Arabidopsis thaliana GN=CYCD3-3 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19 Identity = 71/216 (32.87%), Postives = 104/216 (48.15%), Query Frame = 2 Query: 23 WPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSF--------------TRFL-WSSSDLIIRTTRXXXXXXXXXGESL-DSSAICYQRLNEEMVRSCHQLMEEYLIDTCPSAQVKDQSVEPQVAPPSPVGVLDAAACGSCDTRSDNPGSSNQVEAELCAKRLRSSAP 622 W QL ++ACLSLAAK+EE +VP LLD Q+ + R+VFE KT+QRMEL V+S L+WR++ +TP + + I + S F +RFL +S S L E++ S + +++ E V C++L ++D PS K + + P SP+GV DA+ SD+ S V A SS P Sbjct: 129 WMSQLTALACLSLAAKVEEIRVPFLLDFQVEEARYVFEAKTIQRMELLVLSTLDWRMHPVTPISFFDHIIRRYSFKSHHQLEFLSRCESLLLSIIPDSRFLSFSPSVLATAIMVSVIRDLKMCDEAVYQSQLMTLLKVDSEKVNKCYEL----VLDHSPS---KKRMMNWMQQPASPIGVFDAS------FSSDSSNESWVVSASASVSSSPSSEP 331
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD32_ARATH (Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18 Identity = 67/223 (30.04%), Postives = 103/223 (46.19%), Query Frame = 2 Query: 23 WPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRXXXXXXXXXGESL----------------DSSAICYQRLNEEMVRSCHQLMEEYLIDTCPSAQVKDQSVEPQVAPPSPVGVL--DAAACGSCDTRSDNPGSSNQVEAELCAKRLRSSAPDVQQP 637 W QL++VA LSLAAK+EE QVPLLLDLQ+ + R++FE KT+QRMEL ++S L WR++ +TP + + I + + + F R +I TR ++ S ++N+E V C++L+ E+ + DQ SP GVL D ++ S + + SS+ E KR R ++ P Sbjct: 139 WMSQLVAVASLSLAAKVEEIQVPLLLDLQVEEARYLFEAKTIQRMELLILSTLQWRMHPVTPISFFDHIIRRFGSKWHQQLDFCRKCERLLISVIADTRFMRYFPSVLATAIMILVFEELKPCDEVEYQSQITTLLKVNQEKVNECYELLLEHNPSKKRMMNLVDQD--------SPSGVLDFDDSSNSSWNVSTTASVSSSSSSPEPLLKRRRVQEQQMRLP 353
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD23_ORYSJ (Putative cyclin-D2-3 OS=Oryza sativa subsp. japonica GN=CYCD2-3 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.058e-17 Identity = 39/73 (53.42%), Postives = 55/73 (75.34%), Query Frame = 2 Query: 23 WPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKL 241 W QLL VACLSLAAKMEET P LDLQ+ +P +VF+ +T+ RME+ V++ L WR+ ++TPF Y+ +F+ K+ Sbjct: 149 WMQQLLIVACLSLAAKMEETAAPGTLDLQVCNPEYVFDAETIHRMEIIVLTTLKWRMQAVTPFTYIGHFLDKI 221
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD32_ORYSJ (Cyclin-D3-2 OS=Oryza sativa subsp. japonica GN=CYCD3-2 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15 Identity = 62/209 (29.67%), Postives = 96/209 (45.93%), Query Frame = 2 Query: 23 WPLQLLSVACLSLAAKMEETQVPLLLDLQIF-----DPR--FVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRF--------------LWSSSDLIIRTTRXXXXXXXXXGESLDSSAICYQRLNEEMVRSCHQLMEEYLIDTCPSAQV------KDQSVEPQVAPPSPVGVLDAAACGSCDTRSDNPGS 568 W +L +VAC++LAAK+EET+VP+LLDLQ+ DP +VFE KTV+RMEL V+S L WR++ +TP YL + A+ W+++ L+ G D+ + ++ + C +++ E V + + AP SP GV+ A+AC SCD+ S + S Sbjct: 122 WMARLAAVACVALAAKVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSALGWRMHPVTPLSYLQPLLGTAHAARLHHCDTALLALMPDWRWPRHRPSAWAAAALLATA------GWCGGGGGDDAELLALIDAPKDEMAECAKIISEEAAAAAAGGIVIGGENKRKGAAGLYSAPASPSGVIGASACFSCDSSSSSVDS 324
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD51_ARATH (Cyclin-D5-1 OS=Arabidopsis thaliana GN=CYCD5-1 PE=2 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 7.321e-15 Identity = 43/97 (44.33%), Postives = 60/97 (61.86%), Query Frame = 2 Query: 23 WPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRT 313 W ++LLSVACLSLAAKMEE VP L D FVF+P +++ EL ++S L+W++N ITPF Y +YF++K+ + L SS L+ T Sbjct: 117 WAMRLLSVACLSLAAKMEERIVPGLSQYPQ-DHDFVFKPDVIRKTELLILSTLDWKMNLITPFHYFNYFLAKISQDNHSVSKDLVLLRSSDSLLALT 212
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD52_ORYSJ (Cyclin-D5-2 OS=Oryza sativa subsp. japonica GN=CYCD5-2 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12 Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 2 Query: 23 WPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKL 241 W +LLS+AC+S+AAKMEE Q P L + R VF +++RMEL V+S L WR+ ++TPFD+L F S+L Sbjct: 144 WAARLLSIACVSVAAKMEEYQSPALSEFDAGGGR-VFCSDSIRRMELLVLSTLGWRMGAVTPFDFLPCFSSRL 215
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD51_ORYSJ (Cyclin-D5-1 OS=Oryza sativa subsp. japonica GN=CYCD5-1 PE=2 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11 Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = 2 Query: 23 WPLQLLSVACLSLAAKMEETQVPLLLDLQ--IFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKL 241 W +LL+VAC+SLAAKMEE + P L + + + D + F ++RMEL V+S L+WR+ ++TPFDYL S+L Sbjct: 153 WAARLLAVACVSLAAKMEEYRAPALSEFRAGVGDDGYEFSCVCIRRMELLVLSTLDWRMAAVTPFDYLPCLSSRL 227 The following BLAST results are available for this feature:
BLAST of CF832726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF832726 ID=CF832726; Name=CF832726; organism=Citrus sinensis; type=EST; length=699bpback to top |