CF832726
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD21_ARATH (Cyclin-D2-1 OS=Arabidopsis thaliana GN=CYCD2-1 PE=1 SV=3) HSP 1 Score: 119.398 bits (298), Expect = 1.857e-26 Identity = 74/196 (37.76%), Postives = 105/196 (53.57%), Query Frame = 2 Query: 5 LPLSNGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRXXXXXXXXXGESLDSSAI---------CYQR---------LNEEMVRSCHQLM-----EEYLIDTCPSAQVKDQSVEPQVAPPSPVGVLDA 523 LP W QLL+V+CLSLA+KMEET VP ++DLQ+ DP+FVFE KT++RMEL V++ LNWRL ++TPF ++ YF+ K+ SE ++ SS I+ TT+ E ++A+ C + +E V+ C LM EE + T S + V + P SPVGVL+A Sbjct: 134 LPKDKDWAAQLLAVSCLSLASKMEETDVPHIVDLQVEDPKFVFEAKTIKRMELLVVTTLNWRLQALTPFSFIDYFVDKISGHVSE-----NLIYRSSRFILNTTKAIEFLDFRPSEIAAAAAVSVSISGETECIDEEKALSSLIYVKQERVKRCLNLMRSLTGEENVRGT--SLSQEQARVAVRAVPASPVGVLEA 322
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD41_ORYSJ (Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYCD4-1 PE=2 SV=2) HSP 1 Score: 119.013 bits (297), Expect = 2.426e-26 Identity = 79/203 (38.92%), Postives = 107/203 (52.71%), Query Frame = 2 Query: 5 LPLSNGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRXXXXXXXXXGESLDSSA--------ICYQRLNEEMVRSCHQLMEEY-LIDTCPSAQVKDQSVEPQVAPPSPVGVLDAAACGSCDTRSDNPGSSNQVEA 586 LP W QLL+VACLSLAAKMEET VP LDLQ+ + R+VFE KT+QRMEL V+S L WR+ ++TPF Y+ YF+ +L G R SS+LI+ R E + A + +N+E + C ++++ LI PS+ + P SP GVLDAA C S RSD+ ++ A Sbjct: 140 LPDGKDWMTQLLAVACLSLAAKMEETDVPQSLDLQVGEERYVFEAKTIQRMELLVLSTLKWRMQAVTPFSYVDYFLRELNGGDPPSG---RSALLSSELILCIARGTECLGFRPSEIAAAVAAAVVGEEHAAFSHVNKERMSHCQEVIQAMELIHPKPSS--PSRVFVSSSIPRSPTGVLDAAGCLS--YRSDDSAVASHYAA 335
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD22_ORYSJ (Cyclin-D2-2 OS=Oryza sativa subsp. japonica GN=CYCD2-2 PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.426e-26 Identity = 82/235 (34.89%), Postives = 118/235 (50.21%), Query Frame = 2 Query: 5 LPLSNGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRXXXXXXXXXGE--------------------SLDSSAICYQRLNEEMVRSCHQLMEEYLIDTCPSAQVKDQSVEPQVAPPSPVGVLDAA---------ACGSCDTRSDNPGSSNQVEAELCAKRLRSSAP 622 LP W QLLSV+CLSLA KMEET VPL +DLQ+FD +VFE + ++RMEL VM L WRL ++TPF ++ YF+ K + +P S+T W SDL + T + E +L S I +N+EMV C++LM E + ++++ + V P SP+ VLDAA GS + S+N ++Q A +R ++ P Sbjct: 132 LPHDESWMQQLLSVSCLSLATKMEETVVPLPMDLQVFDAEYVFEARHIKRMELIVMKTLKWRLQAVTPFSFIGYFLDKF--NEGKPPSYTLASW-CSDLTVGTLKDSRFLSFRPSEIAAAVVLAVLAENQFLVFNSALGESEI---PVNKEMVMRCYELMVEKAL----VKKIRNSNASSSV-PHSPITVLDAACFSFRSDDTTLGSSQSNSNNKDYNSQDSAPASKRRRLNTTP 355
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD42_ORYSJ (Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYCD4-2 PE=2 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 2.054e-25 Identity = 77/210 (36.67%), Postives = 108/210 (51.43%), Query Frame = 2 Query: 5 LPLSNGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRXXXXXXXXXGESL----------------DSSAICYQRLNEEMVRSCHQLMEE--YLIDTCPSAQVK-------DQSVEPQVAPPSPVGVLDAAACGSCDTRSDN 559 LP W QLLSVACLS+AAKMEET VP LDLQI +PRF+FE +T+ RMEL V++ LNWR+ ++TPF Y+ YF+ KL + ++ P S +L SS+LI+R E + A + +++ V C + +++ Y + T + Q K S P SPV VLDA G +SD+ Sbjct: 147 LPEGRDWMTQLLSVACLSIAAKMEETVVPQCLDLQIGEPRFLFEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGNAAPRS---WLLRSSELILRIAAGTGFLEFRPSEIAAAVAATVAGEATGVVEEDIAEAFTHVDKGRVLQCQEAIQDHHYSMATINTVQPKPASTRRGSASASSSSVPESPVAVLDA---GCLSYKSDD 350
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD41_ARATH (Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=1 SV=2) HSP 1 Score: 115.546 bits (288), Expect = 2.682e-25 Identity = 71/194 (36.60%), Postives = 100/194 (51.55%), Query Frame = 2 Query: 5 LPLSNGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRXXXXXXXXXGESLDSSAI------------------CYQRLNEEMVRSCHQLMEEYLIDTCPSAQVKDQSVEPQVAPPSPVGVLDAAAC 532 LP GW LQLL+VACLSLAAK+EET+VP+L+DLQ+ DP+FVFE K+VQRMEL V++ L WRL +ITP Y+ YF+ K+ EP + + S +I TT+ E + A+ + L +E V+ +++E D C +P GVL+ +AC Sbjct: 115 LPSGKGWILQLLAVACLSLAAKIEETEVPMLIDLQVGDPQFVFEAKSVQRMELLVLNKLKWRLRAITPCSYIRYFLRKMSKCDQEPSN--TLISRSLQVIASTTKGIDFLEFRPSEVAAAVALSVSGELQRVHFDNSSFSPLFSLLQKERVKKIGEMIESDGSDLCSQ---------------TPNGVLEVSAC 291
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD31_ORYSJ (Cyclin-D3-1 OS=Oryza sativa subsp. japonica GN=CYCD3-1 PE=2 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24 Identity = 76/220 (34.55%), Postives = 113/220 (51.36%), Query Frame = 2 Query: 5 LPLSNGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRXXXXXXXXXGESLDSSAI----------------CYQRLNEEMVRSCHQLMEEYLIDTCPSAQVKDQSVEPQVA-PPSPVGVLDAAACGSCDTRSDNPGS-SNQVEAELCAKRLR 610 LP QLL+VA LSLAAKMEET VP LDLQ+ D ++VFE +T++RMEL V++ L WR+ ++T ++ Y++ K + + T L S DLI+ T + E S A+ CY+ L +E V C++++++ +I + QS + P SP+GVLDAAAC S + GS + E+ +KR R Sbjct: 127 LPQEEACMTQLLAVASLSLAAKMEETVVPHPLDLQVCDAKYVFETRTIKRMELAVLNALKWRMQAVTACSFIDYYLHKF---NDDDTPSTSALSRSVDLILSTCKVAEFLVFRPSEIAASVALVALEEHETSMFERVATCYKNLKKERVLRCYEMIQDKII----MRNIMRQSAGSVFSIPKSPIGVLDAAACISQQSEDTFVGSPATNYESSASSKRRR 339
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD42_ARATH (Cyclin-D4-2 OS=Arabidopsis thaliana GN=CYCD4-2 PE=1 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 2.510e-23 Identity = 56/105 (53.33%), Postives = 72/105 (68.57%), Query Frame = 2 Query: 5 LPLSNGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTR 319 LP W +QLL+VACLSLAAK+EET VP L+ LQ+ P FVFE K+VQRMEL V++VL WRL ++TP Y+ YF+SK+ EP S R + S +I TT+ Sbjct: 106 LPSGKAWTVQLLAVACLSLAAKIEETNVPELMQLQVGAPMFVFEAKSVQRMELLVLNVLRWRLRAVTPCSYVRYFLSKINGYDQEPHS--RLVTRSLQVIASTTK 208
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD11_ARATH (Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3) HSP 1 Score: 107.842 bits (268), Expect = 5.592e-23 Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = 2 Query: 5 LPLSNGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLII 307 LP ++GWP+QLL+VACLSLAAKMEE VP L D Q+ +++FE KT++RMEL V+SVL+WRL S+TPFD++ +F K+ S G+F F S + II Sbjct: 119 LPETSGWPMQLLAVACLSLAAKMEEILVPSLFDFQVAGVKYLFEAKTIKRMELLVLSVLDWRLRSVTPFDFISFFAYKIDPS----GTFLGFFISHATEII 215
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD31_ARATH (Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3) HSP 1 Score: 103.605 bits (257), Expect = 1.055e-21 Identity = 67/221 (30.32%), Postives = 112/221 (50.68%), Query Frame = 2 Query: 23 WPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSF--------------TRFLWSSSDLIIRTT--RXXXXXXXXXGESLDSSAICYQRLNEEMVRSCHQLMEEYLIDTCPSAQVKDQSVEPQVAPPSPVGVLDAAACGSCDTRSDNPGSSNQVEAELCAKRLRSSAPDVQQP 637 W LQL+SVACLSLAAK+EETQVPLLLD Q+ + ++VFE KT+QRMEL ++S L W+++ ITP ++ + I +L ++ F +RF+ ++ T R S ++ + L +E V++C+ L+ + +D Q++ QS + + + S + + + + + S++ A C SS+P Q P Sbjct: 130 WMLQLVSVACLSLAAKVEETQVPLLLDFQVEETKYVFEAKTIQRMELLILSTLEWKMHLITPISFVDHIIRRLGLKNNAHWDFLNKCHRLLLSVISDSRFVGYLPSVVAAATMMRIIEQVDPFDPLSYQTNLLGVLNLTKEKVKTCYDLILQLPVDRI-GLQIQIQSSKKRKSHDSSSSLNSPSCVIDANPFNSDESSNDSWSASSCNPPTSSSSPQQQPP 349
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD21_ORYSJ (Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYCD2-1 PE=3 SV=2) HSP 1 Score: 102.449 bits (254), Expect = 2.350e-21 Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 2 Query: 5 LPLSNGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISK 238 LP GW +QLL+VACLSLAAKMEET VP LLDLQ+ R+VFEP+T+ RME +++ LNWRL S+TPF ++ +F K Sbjct: 119 LPEGQGWAMQLLAVACLSLAAKMEETLVPSLLDLQVECSRYVFEPRTICRMEFLILTALNWRLRSVTPFTFIDFFACK 196 The following BLAST results are available for this feature:
BLAST of CF832726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832726 ID=CF832726; Name=CF832726; organism=Citrus sinensis; type=EST; length=699bpback to top |