CF832726

Overview
NameCF832726
Unique NameCF832726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD11_ORYSJ (Cyclin-D1-1 OS=Oryza sativa subsp. japonica GN=CYCD1-1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 62/164 (37.80%), Postives = 87/164 (53.05%), Query Frame = 2
Query:   17 NGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRXXXXXXXXXGESLDSSAICYQ------------------------RLNEEMVRSCHQLMEEYL 436
            +GW  QLL VACLSLAAKMEE+  P LLDLQI   RF+FEP+T+QRMEL V+  L+WRL S+TPF ++ +F  K+ +S    G  +R L   +  II +             S+ ++A+ +                          L EE + SC+QL++  L
Sbjct:  165 HGWASQLLCVACLSLAAKMEESSAPPLLDLQIEGTRFIFEPRTIQRMELIVLVELDWRLRSVTPFAFVDFFACKVGSS----GRSSRILALRACQIILSAIHELEFLNHCASSMAAAAVLFAVNESPAAMSHRSSVSSESAASWCIGLTEERISSCYQLLQRAL 324          
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD12_ORYSJ (Cyclin-D1-2 OS=Oryza sativa subsp. japonica GN=CYCD1-2 PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.393e-20
Identity = 45/75 (60.00%), Postives = 59/75 (78.67%), Query Frame = 2
Query:   17 NGWPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKL 241
            NGW +QLL+V CLSLAAKMEET VP +LDLQ+ D R++FE +T+ RMEL V+  L+WRL SITPF +++ F  K+
Sbjct:  156 NGWAMQLLAVTCLSLAAKMEETLVPSILDLQMEDARYIFEHRTIFRMELLVLDALDWRLRSITPFTFMYLFADKV 230          
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD33_ARATH (Cyclin-D3-3 OS=Arabidopsis thaliana GN=CYCD3-3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 71/216 (32.87%), Postives = 104/216 (48.15%), Query Frame = 2
Query:   23 WPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSF--------------TRFL-WSSSDLIIRTTRXXXXXXXXXGESL-DSSAICYQRLNEEMVRSCHQLMEEYLIDTCPSAQVKDQSVEPQVAPPSPVGVLDAAACGSCDTRSDNPGSSNQVEAELCAKRLRSSAP 622
            W  QL ++ACLSLAAK+EE +VP LLD Q+ + R+VFE KT+QRMEL V+S L+WR++ +TP  +  + I +    S     F              +RFL +S S L                E++  S  +   +++ E V  C++L    ++D  PS   K + +     P SP+GV DA+        SD+   S  V A        SS P
Sbjct:  129 WMSQLTALACLSLAAKVEEIRVPFLLDFQVEEARYVFEAKTIQRMELLVLSTLDWRMHPVTPISFFDHIIRRYSFKSHHQLEFLSRCESLLLSIIPDSRFLSFSPSVLATAIMVSVIRDLKMCDEAVYQSQLMTLLKVDSEKVNKCYEL----VLDHSPS---KKRMMNWMQQPASPIGVFDAS------FSSDSSNESWVVSASASVSSSPSSEP 331          
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD32_ARATH (Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 67/223 (30.04%), Postives = 103/223 (46.19%), Query Frame = 2
Query:   23 WPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRTTRXXXXXXXXXGESL----------------DSSAICYQRLNEEMVRSCHQLMEEYLIDTCPSAQVKDQSVEPQVAPPSPVGVL--DAAACGSCDTRSDNPGSSNQVEAELCAKRLRSSAPDVQQP 637
            W  QL++VA LSLAAK+EE QVPLLLDLQ+ + R++FE KT+QRMEL ++S L WR++ +TP  +  + I +  +   +   F R        +I  TR           ++                 S      ++N+E V  C++L+ E+         + DQ         SP GVL  D ++  S +  +    SS+    E   KR R     ++ P
Sbjct:  139 WMSQLVAVASLSLAAKVEEIQVPLLLDLQVEEARYLFEAKTIQRMELLILSTLQWRMHPVTPISFFDHIIRRFGSKWHQQLDFCRKCERLLISVIADTRFMRYFPSVLATAIMILVFEELKPCDEVEYQSQITTLLKVNQEKVNECYELLLEHNPSKKRMMNLVDQD--------SPSGVLDFDDSSNSSWNVSTTASVSSSSSSPEPLLKRRRVQEQQMRLP 353          
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD23_ORYSJ (Putative cyclin-D2-3 OS=Oryza sativa subsp. japonica GN=CYCD2-3 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.058e-17
Identity = 39/73 (53.42%), Postives = 55/73 (75.34%), Query Frame = 2
Query:   23 WPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKL 241
            W  QLL VACLSLAAKMEET  P  LDLQ+ +P +VF+ +T+ RME+ V++ L WR+ ++TPF Y+ +F+ K+
Sbjct:  149 WMQQLLIVACLSLAAKMEETAAPGTLDLQVCNPEYVFDAETIHRMEIIVLTTLKWRMQAVTPFTYIGHFLDKI 221          
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD32_ORYSJ (Cyclin-D3-2 OS=Oryza sativa subsp. japonica GN=CYCD3-2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 62/209 (29.67%), Postives = 96/209 (45.93%), Query Frame = 2
Query:   23 WPLQLLSVACLSLAAKMEETQVPLLLDLQIF-----DPR--FVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRF--------------LWSSSDLIIRTTRXXXXXXXXXGESLDSSAICYQRLNEEMVRSCHQLMEEYLIDTCPSAQV------KDQSVEPQVAPPSPVGVLDAAACGSCDTRSDNPGS 568
            W  +L +VAC++LAAK+EET+VP+LLDLQ+      DP   +VFE KTV+RMEL V+S L WR++ +TP  YL   +    A+                         W+++ L+              G   D+  +      ++ +  C +++ E          V      +  +     AP SP GV+ A+AC SCD+ S +  S
Sbjct:  122 WMARLAAVACVALAAKVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSALGWRMHPVTPLSYLQPLLGTAHAARLHHCDTALLALMPDWRWPRHRPSAWAAAALLATA------GWCGGGGGDDAELLALIDAPKDEMAECAKIISEEAAAAAAGGIVIGGENKRKGAAGLYSAPASPSGVIGASACFSCDSSSSSVDS 324          
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD51_ARATH (Cyclin-D5-1 OS=Arabidopsis thaliana GN=CYCD5-1 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.321e-15
Identity = 43/97 (44.33%), Postives = 60/97 (61.86%), Query Frame = 2
Query:   23 WPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKLPASSSEPGSFTRFLWSSSDLIIRT 313
            W ++LLSVACLSLAAKMEE  VP L      D  FVF+P  +++ EL ++S L+W++N ITPF Y +YF++K+   +         L SS  L+  T
Sbjct:  117 WAMRLLSVACLSLAAKMEERIVPGLSQYPQ-DHDFVFKPDVIRKTELLILSTLDWKMNLITPFHYFNYFLAKISQDNHSVSKDLVLLRSSDSLLALT 212          
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD52_ORYSJ (Cyclin-D5-2 OS=Oryza sativa subsp. japonica GN=CYCD5-2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 2
Query:   23 WPLQLLSVACLSLAAKMEETQVPLLLDLQIFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKL 241
            W  +LLS+AC+S+AAKMEE Q P L +      R VF   +++RMEL V+S L WR+ ++TPFD+L  F S+L
Sbjct:  144 WAARLLSIACVSVAAKMEEYQSPALSEFDAGGGR-VFCSDSIRRMELLVLSTLGWRMGAVTPFDFLPCFSSRL 215          
BLAST of CF832726 vs. ExPASy Swiss-Prot
Match: CCD51_ORYSJ (Cyclin-D5-1 OS=Oryza sativa subsp. japonica GN=CYCD5-1 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = 2
Query:   23 WPLQLLSVACLSLAAKMEETQVPLLLDLQ--IFDPRFVFEPKTVQRMELRVMSVLNWRLNSITPFDYLHYFISKL 241
            W  +LL+VAC+SLAAKMEE + P L + +  + D  + F    ++RMEL V+S L+WR+ ++TPFDYL    S+L
Sbjct:  153 WAARLLAVACVSLAAKMEEYRAPALSEFRAGVGDDGYEFSCVCIRRMELLVLSTLDWRMAAVTPFDYLPCLSSRL 227          
The following BLAST results are available for this feature:
BLAST of CF832726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
CCD11_ORYSJ1.166e-2037.80Cyclin-D1-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD12_ORYSJ3.393e-2060.00Cyclin-D1-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD33_ARATH3.751e-1932.87Cyclin-D3-3 OS=Arabidopsis thaliana GN=CYCD3-3 PE=... [more]
CCD32_ARATH3.176e-1830.04Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=... [more]
CCD23_ORYSJ2.058e-1753.42Putative cyclin-D2-3 OS=Oryza sativa subsp. japoni... [more]
CCD32_ORYSJ1.927e-1529.67Cyclin-D3-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD51_ARATH7.321e-1544.33Cyclin-D5-1 OS=Arabidopsis thaliana GN=CYCD5-1 PE=... [more]
CCD52_ORYSJ7.576e-1249.32Cyclin-D5-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD51_ORYSJ1.688e-1146.67Cyclin-D5-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832726 ID=CF832726; Name=CF832726; organism=Citrus sinensis; type=EST; length=699bp
TTTTCTCCCGCTATCAAATGGGTGGCCGCTTCAGCTACTGTCAGTTGCGT
GCTTGTCTTTAGCGGCGAAAATGGAAGAAACCCAAGTGCCCCTGTTATTG
GATCTTCAAATATTTGACCCGAGATTCGTATTTGAACCCAAAACCGTTCA
AAGAATGGAGCTCCGAGTCATGTCAGTTCTCAATTGGAGACTCAATTCCA
TCACCCCGTTTGATTATCTTCATTACTTCATCTCAAAACTACCCGCTTCC
AGCTCCGAACCCGGCTCGTTTACCCGATTTTTATGGTCCTCTTCGGATCT
CATTATCAGAACCACCCGTGCAGCGGCGGCGGTTTTATGTGCCGCCGGTG
AAAGCTTAGACTCATCGGCGATTTGTTATCAGAGACTGAACGAAGAAATG
GTGAGAAGCTGTCACCAACTCATGGAGGAGTATCTGATCGACACCTGTCC
ATCAGCTCAGGTTAAGGACCAGAGCGTGGAGCCGCAAGTCGCGCCTCCAA
GCCCAGTTGGTGTGCTGGACGCGGCTGCTTGTGGAAGTTGCGACACGCGC
TCGGACAATCCCGGCTCCAGTAACCAAGTCGAAGCCGAGCTGTGTGCTAA
GCGGTTACGATCCTCTGCCCCGGATGTACAGCAACCGTAGATAAGACCGC
CCCCCATCACCCTCCCCTATTATTATTTCTCAACTAGCTTTTTGTGTCT
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