CF832740

Overview
NameCF832740
Unique NameCF832740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA1_XANOR (Xylose isomerase 1 OS=Xanthomonas oryzae pv. oryzae GN=xylA1 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.086e-41
Identity = 82/130 (63.08%), Postives = 99/130 (76.15%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLI 391
            +D+AT   FLR++GL  DFKLNIE NHATLSGHS  HD++ A   GLLG+IDAN G+PQ GWDTDQF TD+ +    ML V++ GGLAPGG NFDAK+RRES+D +DLF+AHI GMD  ARGL  A  L+
Sbjct:  253 FDSATVIGFLRQHGLDQDFKLNIEANHATLSGHSFEHDLQVASDAGLLGSIDANRGNPQNGWDTDQFPTDLYDTVGAMLVVLRQGGLAPGGLNFDAKVRRESSDPQDLFLAHIGGMDAFARGLEVANALL 382          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_PEDPA (Xylose isomerase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=xylA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.852e-41
Identity = 81/131 (61.83%), Postives = 98/131 (74.81%), Query Frame = 2
Query:    5 DAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            DAAT   FL+ YGL  DFKLN+E NHA L+GH+  H++  AR  GLLG++DAN GD  +GWD D+F  DI EATL+M  ++KNGGLA GG NFDAK RR+S  +EDLF+AH  GMDT A GLR AAKL+ED
Sbjct:  247 DAATTIAFLKTYGLEKDFKLNLEGNHAYLAGHTYEHEVRVARDAGLLGSLDANMGDKLIGWDIDEFPNDIYEATLVMYEMLKNGGLATGGLNFDAKPRRQSFTMEDLFLAHTAGMDTYAAGLRVAAKLLED 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_BACME (Xylose isomerase OS=Bacillus megaterium GN=xylA PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.125e-41
Identity = 76/131 (58.02%), Postives = 98/131 (74.81%), Query Frame = 2
Query:    5 DAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            DAAT  +FLR+YGL   FKLN+E NHATL+GH+  H++  AR+ GLLG++DAN GDP +GWDTD+F TD+   TL M  +++NGGL  GG NFDAK+RR S + +DL  AH+ GMD  ARGL+ A KL+ED
Sbjct:  252 DAATTISFLRQYGLDKYFKLNLEANHATLAGHTFEHELRVARVQGLLGSVDANQGDPLLGWDTDEFPTDLYSTTLAMYEILQNGGLGSGGLNFDAKVRRGSFEQDDLLYAHVAGMDAFARGLKVAHKLVED 382          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA1_XANCP (Xylose isomerase 1 OS=Xanthomonas campestris pv. campestris GN=xylA1 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.125e-41
Identity = 81/130 (62.31%), Postives = 98/130 (75.38%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLI 391
            +D+AT   FL ++GL  DFKLNIE NHATLSGHS  HD++ A   GLLG+IDAN G+PQ GWDTDQF TD+ +    ML V++ GGLAPGG NFDAK+RRES+D +DLF+AHI GMD  ARGL  A  L+
Sbjct:  253 FDSATVIGFLHQHGLDQDFKLNIEANHATLSGHSFEHDLQVASDAGLLGSIDANRGNPQNGWDTDQFPTDLYDTVGAMLVVLRQGGLAPGGLNFDAKVRRESSDPQDLFLAHIGGMDAFARGLEVADALL 382          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA1_XANC8 (Xylose isomerase 1 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=xylA1 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.125e-41
Identity = 81/130 (62.31%), Postives = 98/130 (75.38%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLI 391
            +D+AT   FL ++GL  DFKLNIE NHATLSGHS  HD++ A   GLLG+IDAN G+PQ GWDTDQF TD+ +    ML V++ GGLAPGG NFDAK+RRES+D +DLF+AHI GMD  ARGL  A  L+
Sbjct:  253 FDSATVIGFLHQHGLDQDFKLNIEANHATLSGHSFEHDLQVASDAGLLGSIDANRGNPQNGWDTDQFPTDLYDTVGAMLVVLRQGGLAPGGLNFDAKVRRESSDPQDLFLAHIGGMDAFARGLEVADALL 382          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_BACSU (Xylose isomerase OS=Bacillus subtilis GN=xylA PE=3 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 5.388e-41
Identity = 77/131 (58.78%), Postives = 98/131 (74.81%), Query Frame = 2
Query:    5 DAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            DAAT   FL++YGL N FKLN+E NHATL+GH+  H++  AR++GLLG++DAN G P +GWDTD+F TD+   TL M  +++NGGL  GG NFDAK+RR S + +DL  AHI GMD  ARGL+ A KLIED
Sbjct:  252 DAATTIAFLKQYGLDNHFKLNLEANHATLAGHTFEHELRMARVHGLLGSVDANQGHPLLGWDTDEFPTDLYSTTLAMYEILQNGGLGSGGLNFDAKVRRSSFEPDDLIYAHIAGMDAFARGLKVAHKLIED 382          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_BACC1 (Xylose isomerase OS=Bacillus cereus (strain ATCC 10987) GN=xylA PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.190e-41
Identity = 76/131 (58.02%), Postives = 98/131 (74.81%), Query Frame = 2
Query:    5 DAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            DAAT  +FLR+YGL N FKLN+E NHATL+GH+  H++  AR+ G LG++DAN G+P +GWDTD+F T++   TL M  +++NGGL  GG NFDAK+RR S + EDL  AHI GMD  ARGL+ A KL+ED
Sbjct:  252 DAATTISFLRQYGLENHFKLNLEANHATLAGHTFEHELRVARVQGFLGSVDANQGNPLLGWDTDEFPTNLYSTTLAMYEILQNGGLGSGGLNFDAKVRRASFEEEDLVYAHIAGMDAFARGLKVAHKLLED 382          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA1_XANAC (Xylose isomerase 1 OS=Xanthomonas axonopodis pv. citri GN=xylA1 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.190e-41
Identity = 81/130 (62.31%), Postives = 98/130 (75.38%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLI 391
            +D+AT   FLR++GL  DFKLNIE NHATLSGHS  HD++ A   GLLG+IDAN G+ Q GWDTDQF TD+ +    ML V++ GGLAPGG NFDAK+RRES+D +DLF+AHI GMD  ARGL  A  L+
Sbjct:  249 FDSATVIGFLRQHGLDQDFKLNIEANHATLSGHSFEHDLQVASDAGLLGSIDANRGNAQNGWDTDQFPTDLYDTVGAMLVVLRQGGLAPGGLNFDAKVRRESSDPQDLFLAHIGGMDAFARGLEVANALL 378          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_ENTFA (Xylose isomerase OS=Enterococcus faecalis GN=xylA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.200e-40
Identity = 76/132 (57.58%), Postives = 100/132 (75.76%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            +DAAT   F+ KYGL  DFKLN+E NHATL+GH+  H++  AR  G LG+IDAN GD  +GWDTD+F T++ + TL M  +++NGG+ PGG NFD+K+RR S ++EDL +AHI GMDT ARGL++A KL ED
Sbjct:  243 FDAATTMAFILKYGLEKDFKLNLEANHATLAGHTFEHELNVARNYGALGSIDANQGDVLLGWDTDEFPTNVYDVTLAMYEILENGGIEPGGINFDSKVRRSSFEMEDLLLAHIAGMDTFARGLKSAMKLKED 374          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_PSEA6 (Xylose isomerase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=xylA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.047e-40
Identity = 76/132 (57.58%), Postives = 100/132 (75.76%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            +D AT   FL++YGL N+FK+NIE NHATL+GHS  H++ TA   GL G+IDAN GDPQ+GWDTDQF   + E +L++  ++K GG   GGFNFD KLRR+S+D +D+FIAHI GMD +A GL+ AA +IE+
Sbjct:  245 YDTATVYGFLKQYGLENEFKVNIEANHATLAGHSFQHEVATAISLGLFGSIDANRGDPQLGWDTDQFPNSVEELSLVIYEILKAGGFTSGGFNFDTKLRRQSSDPQDMFIAHIGGMDHLAIGLKKAALMIEN 376          
The following BLAST results are available for this feature:
BLAST of CF832740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
XYLA1_XANOR1.086e-4163.08Xylose isomerase 1 OS=Xanthomonas oryzae pv. oryza... [more]
XYLA_PEDPA1.852e-4161.83Xylose isomerase OS=Pediococcus pentosaceus (strai... [more]
XYLA_BACME4.125e-4158.02Xylose isomerase OS=Bacillus megaterium GN=xylA PE... [more]
XYLA1_XANCP4.125e-4162.31Xylose isomerase 1 OS=Xanthomonas campestris pv. c... [more]
XYLA1_XANC84.125e-4162.31Xylose isomerase 1 OS=Xanthomonas campestris pv. c... [more]
XYLA_BACSU5.388e-4158.78Xylose isomerase OS=Bacillus subtilis GN=xylA PE=3... [more]
XYLA_BACC19.190e-4158.02Xylose isomerase OS=Bacillus cereus (strain ATCC 1... [more]
XYLA1_XANAC9.190e-4162.31Xylose isomerase 1 OS=Xanthomonas axonopodis pv. c... [more]
XYLA_ENTFA1.200e-4057.58Xylose isomerase OS=Enterococcus faecalis GN=xylA ... [more]
XYLA_PSEA62.047e-4057.58Xylose isomerase OS=Pseudoalteromonas atlantica (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832740 ID=CF832740; Name=CF832740; organism=Citrus sinensis; type=EST; length=405bp
CTGGGATGCAGCAACAGCAGCTAATTTCTTGCGGAAATATGGCCTCATAA
ATGACTTTAAACTAAACATTGAGTGTAACCATGCCACCCTATCTGGTCAC
AGCTGCCATCATGATATTGAAACTGCAAGACTCAATGGTCTGCTAGGAAA
CATCGATGCAAACACTGGTGACCCTCAAGTTGGTTGGGATACAGATCAAT
TCCTGACAGATATTGGAGAGGCTACTTTGATTATGCTCAGTGTGATTAAA
AATGGAGGTTTGGCACCTGGAGGATTCAACTTTGATGCAAAATTACGAAG
AGAGAGCACTGACGTTGAAGACTTGTTCATTGCTCATATTGTTGGAATGG
ATACCGTTGCTCGTGGACTTCGAACTGCTGCCAAGCTGATTGAGGATGGT
TCTCT
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