CF832740

Overview
NameCF832740
Unique NameCF832740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_BRUSI (Xylose isomerase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=xylA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.841e-35
Identity = 70/134 (52.24%), Postives = 90/134 (67.16%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGS 403
            +D AT   FL++YGL N+ K+NIE  HA L+GHS  H++  AR  G+ G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFDAKLRR+S D +DL I HI GMD  ARGL+ AA+++EDG+
Sbjct:  244 YDVATVYGFLKRYGLENEVKVNIEQGHAILAGHSFEHELALARTLGIFGSIDMNRNDYQSGWDTDQFPNNVPEKALAYYQVLLAGGFTTGGTNFDAKLRRQSLDPQDLLIGHIGGMDCCARGLKAAARMLEDGA 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_BRUME (Xylose isomerase OS=Brucella melitensis GN=xylA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.841e-35
Identity = 70/134 (52.24%), Postives = 90/134 (67.16%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGS 403
            +D AT   FL++YGL N+ K+NIE  HA L+GHS  H++  AR  G+ G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFDAKLRR+S D +DL I HI GMD  ARGL+ AA+++EDG+
Sbjct:  244 YDVATVYGFLKRYGLENEVKVNIEQGHAILAGHSFEHELALARTLGIFGSIDMNRNDYQSGWDTDQFPNNVPEMALAYYQVLLAGGFTTGGTNFDAKLRRQSLDPQDLLIGHIGGMDCCARGLKAAARMLEDGA 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_BRUMB (Xylose isomerase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=xylA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.841e-35
Identity = 70/134 (52.24%), Postives = 90/134 (67.16%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGS 403
            +D AT   FL++YGL N+ K+NIE  HA L+GHS  H++  AR  G+ G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFDAKLRR+S D +DL I HI GMD  ARGL+ AA+++EDG+
Sbjct:  244 YDVATVYGFLKRYGLENEVKVNIEQGHAILAGHSFEHELALARTLGIFGSIDMNRNDYQSGWDTDQFPNNVPEMALAYYQVLLAGGFTTGGTNFDAKLRRQSLDPQDLLIGHIGGMDCCARGLKAAARMLEDGA 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_BRUC2 (Xylose isomerase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=xylA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.841e-35
Identity = 70/134 (52.24%), Postives = 90/134 (67.16%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGS 403
            +D AT   FL++YGL N+ K+NIE  HA L+GHS  H++  AR  G+ G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFDAKLRR+S D +DL I HI GMD  ARGL+ AA+++EDG+
Sbjct:  244 YDVATVYGFLKRYGLENEVKVNIEQGHAILAGHSFEHELALARTLGIFGSIDMNRNDYQSGWDTDQFPNNVPEMALAYYQVLLAGGFTTGGTNFDAKLRRQSLDPQDLLIGHIGGMDCCARGLKAAARMLEDGA 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_BRUAB (Xylose isomerase OS=Brucella abortus GN=xylA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.841e-35
Identity = 70/134 (52.24%), Postives = 90/134 (67.16%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGS 403
            +D AT   FL++YGL N+ K+NIE  HA L+GHS  H++  AR  G+ G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFDAKLRR+S D +DL I HI GMD  ARGL+ AA+++EDG+
Sbjct:  244 YDVATVYGFLKRYGLENEVKVNIEQGHAILAGHSFEHELALARTLGIFGSIDMNRNDYQSGWDTDQFPNNVPEMALAYYQVLLAGGFTTGGTNFDAKLRRQSLDPQDLLIGHIGGMDCCARGLKAAARMLEDGA 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_BRUA2 (Xylose isomerase OS=Brucella abortus (strain 2308) GN=xylA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.841e-35
Identity = 70/134 (52.24%), Postives = 90/134 (67.16%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGS 403
            +D AT   FL++YGL N+ K+NIE  HA L+GHS  H++  AR  G+ G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFDAKLRR+S D +DL I HI GMD  ARGL+ AA+++EDG+
Sbjct:  244 YDVATVYGFLKRYGLENEVKVNIEQGHAILAGHSFEHELALARTLGIFGSIDMNRNDYQSGWDTDQFPNNVPEMALAYYQVLLAGGFTTGGTNFDAKLRRQSLDPQDLLIGHIGGMDCCARGLKAAARMLEDGA 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_BRUA1 (Xylose isomerase OS=Brucella abortus (strain S19) GN=xylA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.841e-35
Identity = 70/134 (52.24%), Postives = 90/134 (67.16%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGS 403
            +D AT   FL++YGL N+ K+NIE  HA L+GHS  H++  AR  G+ G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFDAKLRR+S D +DL I HI GMD  ARGL+ AA+++EDG+
Sbjct:  244 YDVATVYGFLKRYGLENEVKVNIEQGHAILAGHSFEHELALARTLGIFGSIDMNRNDYQSGWDTDQFPNNVPEMALAYYQVLLAGGFTTGGTNFDAKLRRQSLDPQDLLIGHIGGMDCCARGLKAAARMLEDGA 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_RHOS5 (Xylose isomerase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=xylA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.192e-34
Identity = 70/134 (52.24%), Postives = 90/134 (67.16%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGS 403
            +D AT   FL+++GL N+ KLN+E  HA L+GHS  H++  A   G+LG+ID N  D Q GWDTDQF  +  E  L    V++ GG   GG NFDAK+RR+S D EDL +AH+ GMDT AR L+ AA+L EDGS
Sbjct:  243 YDVATVYGFLKRFGLENEVKLNVEQGHAILAGHSFEHELALAASLGILGSIDMNRNDYQSGWDTDQFPNNHPEMALAYYEVLRAGGFTTGGTNFDAKIRRQSLDPEDLILAHVGGMDTCARALKAAARLYEDGS 376          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_RHISN (Xylose isomerase OS=Rhizobium sp. (strain NGR234) GN=xylA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.192e-34
Identity = 71/132 (53.79%), Postives = 87/132 (65.91%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            +D AT   FL+KYGL N+ K+NIE  HA L+GHS  H++  A   G+ G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFDAKLRR+S D EDL I HI GMD  ARGL+ AAK++ED
Sbjct:  244 FDVATVYGFLKKYGLENEVKVNIEQGHAILAGHSFEHELALANALGIFGSIDMNRNDYQSGWDTDQFPNNVPEMALAYHHVLSGGGFKTGGTNFDAKLRRQSIDPEDLLIGHIGGMDCCARGLKAAAKMVED 375          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_RHIME (Xylose isomerase OS=Rhizobium meliloti GN=xylA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.192e-34
Identity = 71/132 (53.79%), Postives = 87/132 (65.91%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            +D AT   FL++YGL N+ K+NIE  HA L+GHS  H++  A   G+ G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFDAKLRR+S D EDL I HI GMD  ARGL+ AAK+IED
Sbjct:  244 YDVATVYGFLKRYGLENEVKVNIEQGHAILAGHSFEHELALANALGIFGSIDMNRNDYQSGWDTDQFPNNVPEMALAYYHVLAGGGFKTGGTNFDAKLRRQSIDPEDLLIGHIGGMDCCARGLKAAAKMIED 375          
The following BLAST results are available for this feature:
BLAST of CF832740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
XYLA_BRUSI9.841e-3552.24Xylose isomerase OS=Brucella suis (strain ATCC 234... [more]
XYLA_BRUME9.841e-3552.24Xylose isomerase OS=Brucella melitensis GN=xylA PE... [more]
XYLA_BRUMB9.841e-3552.24Xylose isomerase OS=Brucella melitensis biotype 2 ... [more]
XYLA_BRUC29.841e-3552.24Xylose isomerase OS=Brucella canis (strain ATCC 23... [more]
XYLA_BRUAB9.841e-3552.24Xylose isomerase OS=Brucella abortus GN=xylA PE=3 ... [more]
XYLA_BRUA29.841e-3552.24Xylose isomerase OS=Brucella abortus (strain 2308)... [more]
XYLA_BRUA19.841e-3552.24Xylose isomerase OS=Brucella abortus (strain S19) ... [more]
XYLA_RHOS52.192e-3452.24Xylose isomerase OS=Rhodobacter sphaeroides (strai... [more]
XYLA_RHISN2.192e-3453.79Xylose isomerase OS=Rhizobium sp. (strain NGR234) ... [more]
XYLA_RHIME2.192e-3453.79Xylose isomerase OS=Rhizobium meliloti GN=xylA PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832740 ID=CF832740; Name=CF832740; organism=Citrus sinensis; type=EST; length=405bp
CTGGGATGCAGCAACAGCAGCTAATTTCTTGCGGAAATATGGCCTCATAA
ATGACTTTAAACTAAACATTGAGTGTAACCATGCCACCCTATCTGGTCAC
AGCTGCCATCATGATATTGAAACTGCAAGACTCAATGGTCTGCTAGGAAA
CATCGATGCAAACACTGGTGACCCTCAAGTTGGTTGGGATACAGATCAAT
TCCTGACAGATATTGGAGAGGCTACTTTGATTATGCTCAGTGTGATTAAA
AATGGAGGTTTGGCACCTGGAGGATTCAACTTTGATGCAAAATTACGAAG
AGAGAGCACTGACGTTGAAGACTTGTTCATTGCTCATATTGTTGGAATGG
ATACCGTTGCTCGTGGACTTCGAACTGCTGCCAAGCTGATTGAGGATGGT
TCTCT
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