CF832740

Overview
NameCF832740
Unique NameCF832740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_BRAJA (Xylose isomerase OS=Bradyrhizobium japonicum GN=xylA PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 4.571e-32
Identity = 62/134 (46.27%), Postives = 85/134 (63.43%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGS 403
            +D AT   FL +Y L+ D KLNIE NHA L+GHS HH++  A   G+ G++D N GD  +GWDTDQF  ++ E  L+   ++  GG   GG NFDAK+RR+S D +DL  AH+  MD  AR    AA +++ G+
Sbjct:  246 FDVATCYGFLARYDLLKDVKLNIEQNHAILAGHSFHHEVALAEALGVFGSLDVNRGDDLLGWDTDQFAMNVPELALVFHEILNRGGFTSGGLNFDAKIRRQSIDPDDLIHAHVGSMDACARAFLAAADMLDAGA 379          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_AGRVS (Xylose isomerase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=xylA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.571e-32
Identity = 66/132 (50.00%), Postives = 85/132 (64.39%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            +D AT   FL+ YGL  + K+NIE  HA L+GH+  H++  A   G+ G+ID N  D Q GWDTDQF  ++ E  L    V++ GG   GG NFD+KLRR+S D  DL I HI GMD  ARGL+ AAK++ED
Sbjct:  244 YDVATVYGFLKTYGLEKEVKVNIEQGHAILAGHTFEHELALANALGIFGSIDMNRNDYQSGWDTDQFPNNVPEMALAYYQVLQAGGFTSGGTNFDSKLRRQSIDPADLLIGHIGGMDCCARGLKAAAKMVED 375          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_LACLS (Xylose isomerase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=xylA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATL 229
            +DAATA  FL+KY L   FKLNIE NHA L+GH+  H++ TAR  G LG+IDAN G+  +GWDTD+F T + + TL
Sbjct:  245 FDAATALAFLQKYDLDKYFKLNIETNHAWLAGHTFEHELNTARTFGALGSIDANQGNYLLGWDTDEFPTLVIDITL 320          
The following BLAST results are available for this feature:
BLAST of CF832740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
XYLA_BRAJA4.571e-3246.27Xylose isomerase OS=Bradyrhizobium japonicum GN=xy... [more]
XYLA_AGRVS4.571e-3250.00Xylose isomerase OS=Agrobacterium vitis (strain S4... [more]
XYLA_LACLS4.154e-1756.58Xylose isomerase OS=Lactococcus lactis subsp. crem... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832740 ID=CF832740; Name=CF832740; organism=Citrus sinensis; type=EST; length=405bp
CTGGGATGCAGCAACAGCAGCTAATTTCTTGCGGAAATATGGCCTCATAA
ATGACTTTAAACTAAACATTGAGTGTAACCATGCCACCCTATCTGGTCAC
AGCTGCCATCATGATATTGAAACTGCAAGACTCAATGGTCTGCTAGGAAA
CATCGATGCAAACACTGGTGACCCTCAAGTTGGTTGGGATACAGATCAAT
TCCTGACAGATATTGGAGAGGCTACTTTGATTATGCTCAGTGTGATTAAA
AATGGAGGTTTGGCACCTGGAGGATTCAACTTTGATGCAAAATTACGAAG
AGAGAGCACTGACGTTGAAGACTTGTTCATTGCTCATATTGTTGGAATGG
ATACCGTTGCTCGTGGACTTCGAACTGCTGCCAAGCTGATTGAGGATGGT
TCTCT
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